Gene detail

Detailed information of FUN_046234-T1 in Siderastrea siderea

Genomic Location: contig_64:244890...254440
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

FUN_046234-T1

ATGATGCAGGAGCTGGATACAAGCGATCCTATGATCAAGAAGAAATCCAGTTCCCCAAGTAATGCTCCTCTGATATGGAAGGTCCTTGCAATTGTCTTCATTGTGATAAGCATAGCACTGCTGATCGCTTTGATAGTGGTAGCTACAAAGTCAAAGAAAGCCGAAGAACCAGACTCAACCAAAAATTCTGACTCCAATGGCGCCAGAACCAAAGATGGATACTGCGCTGAGGGTTTGTCCAGTCCCAATGATACATCCAAGTCCGCTGGTGGTTTTGATGACCTCACTGTTGGCGAGCTCACCGCTGTTAGGGATTATTTGATGAAGCAACCTGAACTGGGTCTTACGAAATACGAAGAGGCAACTGTAAGCAGCAACTACATATACTCGGTGCAGCTGCTGCCACCGCCCAAAGACGAGGTTCTTGCCTATTTGGACAACAATGGAGCCAAGCCTGAAAGGAAAGCTGTTGCGGTGGTATTCCATGGAGCTACCGACCCTCCGGTGATCAAAGAGTACATAATCAGTCCTGTTGCTAACCCAACTACGCACGCGACCAGAAAAGTCCCTGGTGGACAGAAAGATTCCGTCCCATTCAACGCTCGTCCCTACGACATCTTTGTGGAGAGTACTGCATTAGGTAAAGCCATTGTTAATGGTGCTGCTCAGAACCTCTCCAAGCTGATGCGAGAAAGCTATGGTGGCTACTCGTACTACCCTGGCTGCAAAGAAAAGTGTTTATTTTTTATCTCGGCCACAGCGCCCATGGGATTTACGAGCAGTGATCGCTACACTTGGATTTTTTTCGTACGGAATACGGTAGGTCAAATCCTACACCCGTTAGATCTACAGCTGTTAGTGAATCATGCAGGAGCAGATGTCTCTAAATGGAAAATCCTTAAAGTCATCTACAATAATCAAACATTTGATTCAGTTGGTGAGCTGGTAGAGAAATACAACAATGGTTCCATTGCCAAAGCCAAGATAGCCGCACCTACCGGGAATGATGCACTTTTCTCAACTTACGAACGCCGAGGTGACCCACAACCACCGAAACCAATGCGAGGCCCCGAACAGTACGAACCTGATGGTAAGCGATATACTGTCAATGGACGTCACGTTAGCTACATGTCTTGGTCTTTCGATTTCAGAATGGATTCTAATAGTGGAATGCAAGTTTATGATATAAAGTTCAACGGAGAAAGAATCGTCTATGAGCTAAGTCTTCAAGAAGCCGCTGCTACGTACGCCGGCTACTACCCAACCCCATCATGGAACAACTTCCTTGATGGTAGCTGGAGGATGGGAATGAGTAGCTACGAAATGGTTCGTGGAGTGGATTGTCCTAACACCGCTACCTTCTTCGACCTAGTACACATGATCGGAGTTCCAATACCCCTGACATTTCACAACGCAGTCTGTGTGTTCGAGCTTAACACTGGAATGCCGCTACGTCGCCATTACGATAACAACTTCATGGGTGGATATAAGTTCTATGGTGGAATGACCAATCACGTGTTAGTTCTGCGTACTGTGGCGACGGTCTACAACTACGACTATTTGTTCGACTTCATCTTTTACCAGAATGGCGTCATAGAAGTGAAGATTTCAGCTTCTGGGTATGTCTCTGGTGCTTTCTATGACTCGAATGTTAATCCATATGCTTTCCCACTCCACGAAAATTTTACTAGTGGTACACACGATCATCTAATCAACTACAAGGTTGATTTGGACGTCGGTGGACGGAAGAATTCGTACGAGACGATTGAAATAGGAATCGAGGACATCACCGAGCGCTGGTTCCCGAATAGACGCCGTGTCCAAAAAGTGCTAAAACGCAGTGTGAAGAAAACGGAGTTGGAGGCTGCTTACAAGTTCAACTTCGATACACCAAAGTATCTGAACTTCTTTAATGAAGCGAAGAAGAACAGGATGGGTGTGGCGAAAGGGTATCGCATCCAGCTTGGAAGTATACTAAAACAGCTGTATCCTGAAGATTGGATGATCGTGCCCATGATGAGCTGGTCTCTTTACCAAATGGCAGTCACTAAATACAAGGAAAATGAGACACAGAGTAGCTCCATCTATAACCAGAATGCCCCAACTGATGCACAGCTGGACTTCCGCAATTACCTTCTCGATGACGACTCCATTTTAAACGAGGACCTGGTTGCCTGGGTGACGATTGGTGTGATGCACGTGCCTCACTCAGAGGACCTACCTAACACGGCGACCGCTGCCAACTCAGCCAACTTCTTCCTCAGGCCCTTCAATTACTTTGATGAGGATCCTTCCATTGGATCAACCAACGCAATCTTGATCACGCCCACGGATCCCTCGTTCAGCGGTCAGAAGGTGGAACGATACGGTACCCCGGATGGACCGCAGTGTGTGCCAAAGAAACACAAGTTCGACTTCAAGGGCGTTTATTATGGATGGAGTTGA

Transcript

FUN_046234-T1

GCATTGTTCGCGAGCGTGGGAAAAATCTGAAATCAAATGCCATTTAGCTTCCATAAAATTTAAAATCTGAGAAAAAGGGTGAATTGTAGGCTTATCATGACGGCTAtaacattttttggcaaaataaataaattgaggTCGTTCAATGCAGAATCTCGCTCCATGACACCTGCAAGTCGGAAGTGTTGTGTATCAATCAGGGGTCTATACGCCGGGGATGTGCCGCTCAAGACAGGGCACACACCGGCTACTCAATCTTGCGttgattcccccccccccctttcccttccctcggCAGCTTGTCATGTTCTAGTGGGTCTCTGAAATGGCAATGCTCAAGAGGCGTTCGCCAAATGCAGACATAAAAACCTTTGCACACATCCCATGTCTCAGAAGGCCCAACTTGAGAGCATTAGATTGAGCAGAGAGGGATAATATGTTCCATCTGACTTGTAACCTGGAAGGTAAAAGGTCTCTACTATCCTTAAAGAACGATAACGGCTGCCCGCAGTATATGCTCCCTCAAGGATCCTCTCGGGCCTAGactaaaaatgaaattaaacgcTTTCTAGCTCAGCTACGTCCCTGAGAATGAATCTATTCGCTATCAGCTGAAATTCTGCCAGTTGCGAATTTGTAGATGGGTGCAACGTTGGCTGTGGTGCTTCCTTTCGATTTTTCAGCATTGTCGCTGGACGTAATTCATCAGCGCTAAATATATAGAGGACATTACACCGCAGCGCGGAGATATCAAAAGGCTTTCCTTTGGTCTAAATTGATTTTCATTTTTCCTTCACACAGTATGATGCAGGAGCTGGATACAAGCGATCCTATGATCAAGAAGAAATCCAGTTCCCCAAGTAATGCTCCTCTGATATGGAAGGTCCTTGCAATTGTCTTCATTGTGATAAGCATAGCACTGCTGATCGCTTTGATAGTGGTAGCTACAAAGTCAAAGAAAGCCGAAGAACCAGACTCAACCAAAAATTCTGACTCCAATGGCGCCAGAACCAAAGATGGATACTGCGCTGAGGGTTTGTCCAGTCCCAATGATACATCCAAGTCCGCTGGTGGTTTTGATGACCTCACTGTTGGCGAGCTCACCGCTGTTAGGGATTATTTGATGAAGCAACCTGAACTGGGTCTTACGAAATACGAAGAGGCAACTGTAAGCAGCAACTACATATACTCGGTGCAGCTGCTGCCACCGCCCAAAGACGAGGTTCTTGCCTATTTGGACAACAATGGAGCCAAGCCTGAAAGGAAAGCTGTTGCGGTGGTATTCCATGGAGCTACCGACCCTCCGGTGATCAAAGAGTACATAATCAGTCCTGTTGCTAACCCAACTACGCACGCGACCAGAAAAGTCCCTGGTGGACAGAAAGATTCCGTCCCATTCAACGCTCGTCCCTACGACATCTTTGTGGAGAGTACTGCATTAGGTAAAGCCATTGTTAATGGTGCTGCTCAGAACCTCTCCAAGCTGATGCGAGAAAGCTATGGTGGCTACTCGTACTACCCTGGCTGCAAAGAAAAGTGTTTATTTTTTATCTCGGCCACAGCGCCCATGGGATTTACGAGCAGTGATCGCTACACTTGGATTTTTTTCGTACGGAATACGGTAGGTCAAATCCTACACCCGTTAGATCTACAGCTGTTAGTGAATCATGCAGGAGCAGATGTCTCTAAATGGAAAATCCTTAAAGTCATCTACAATAATCAAACATTTGATTCAGTTGGTGAGCTGGTAGAGAAATACAACAATGGTTCCATTGCCAAAGCCAAGATAGCCGCACCTACCGGGAATGATGCACTTTTCTCAACTTACGAACGCCGAGGTGACCCACAACCACCGAAACCAATGCGAGGCCCCGAACAGTACGAACCTGATGGTAAGCGATATACTGTCAATGGACGTCACGTTAGCTACATGTCTTGGTCTTTCGATTTCAGAATGGATTCTAATAGTGGAATGCAAGTTTATGATATAAAGTTCAACGGAGAAAGAATCGTCTATGAGCTAAGTCTTCAAGAAGCCGCTGCTACGTACGCCGGCTACTACCCAACCCCATCATGGAACAACTTCCTTGATGGTAGCTGGAGGATGGGAATGAGTAGCTACGAAATGGTTCGTGGAGTGGATTGTCCTAACACCGCTACCTTCTTCGACCTAGTACACATGATCGGAGTTCCAATACCCCTGACATTTCACAACGCAGTCTGTGTGTTCGAGCTTAACACTGGAATGCCGCTACGTCGCCATTACGATAACAACTTCATGGGTGGATATAAGTTCTATGGTGGAATGACCAATCACGTGTTAGTTCTGCGTACTGTGGCGACGGTCTACAACTACGACTATTTGTTCGACTTCATCTTTTACCAGAATGGCGTCATAGAAGTGAAGATTTCAGCTTCTGGGTATGTCTCTGGTGCTTTCTATGACTCGAATGTTAATCCATATGCTTTCCCACTCCACGAAAATTTTACTAGTGGTACACACGATCATCTAATCAACTACAAGGTTGATTTGGACGTCGGTGGACGGAAGAATTCGTACGAGACGATTGAAATAGGAATCGAGGACATCACCGAGCGCTGGTTCCCGAATAGACGCCGTGTCCAAAAAGTGCTAAAACGCAGTGTGAAGAAAACGGAGTTGGAGGCTGCTTACAAGTTCAACTTCGATACACCAAAGTATCTGAACTTCTTTAATGAAGCGAAGAAGAACAGGATGGGTGTGGCGAAAGGGTATCGCATCCAGCTTGGAAGTATACTAAAACAGCTGTATCCTGAAGATTGGATGATCGTGCCCATGATGAGCTGGTCTCTTTACCAAATGGCAGTCACTAAATACAAGGAAAATGAGACACAGAGTAGCTCCATCTATAACCAGAATGCCCCAACTGATGCACAGCTGGACTTCCGCAATTACCTTCTCGATGACGACTCCATTTTAAACGAGGACCTGGTTGCCTGGGTGACGATTGGTGTGATGCACGTGCCTCACTCAGAGGACCTACCTAACACGGCGACCGCTGCCAACTCAGCCAACTTCTTCCTCAGGCCCTTCAATTACTTTGATGAGGATCCTTCCATTGGATCAACCAACGCAATCTTGATCACGCCCACGGATCCCTCGTTCAGCGGTCAGAAGGTGGAACGATACGGTACCCCGGATGGACCGCAGTGTGTGCCAAAGAAACACAAGTTCGACTTCAAGGGCGTTTATTATGGATGGAGTTGA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01179 all species →	Cu_amine_oxid	Copper amine oxidase, enzyme domain	Domain	Interproscan
PF02728 all species →	Cu_amine_oxidN3	Copper amine oxidase, N3 domain	Domain	Interproscan
PF02727 all species →	Cu_amine_oxidN2	Copper amine oxidase, N2 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR049948 all species →	Conserved_site	Copper amine oxidase, TPQ-binding site	Interproscan
IPR015798 all species →	Domain	Copper amine oxidase, catalytic domain	Interproscan
IPR015802 all species →	Domain	Copper amine oxidase, N3-terminal	Interproscan
IPR036460 all species →	Homologous_superfamily	Copper amine oxidase, catalytic domain superfamily	Interproscan
IPR049947 all species →	Conserved_site	Copper amine oxidase, copper-binding site	Interproscan
IPR016182 all species →	Homologous_superfamily	Copper amine oxidase, N-terminal	Interproscan
IPR015800 all species →	Domain	Copper amine oxidase, N2-terminal	Interproscan
IPR000269 all species →	Family	Copper amine oxidase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10638 all species →	COPPER AMINE OXIDASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005507 all species →	Molecular Function	copper ion binding	Interproscan
GO:0008131 all species →	Molecular Function	primary methylamine oxidase activity	Interproscan
GO:0009308 all species →	Biological Process	amine metabolic process	Interproscan
GO:0048038 all species →	Molecular Function	quinone binding	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for FUN_046234-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.