Detailed information of FUN_046830-T1 in Siderastrea siderea

Genomic Location: contig_65:3151315...3159952
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
No Pfam domain signature was detected for FUN_046830-T1. This gene does have a gene model — the search simply returned no hit.
 InterPro
InterPro termTypeDescriptionSource
IPR027095
all species →		FamilyGolgin-45Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR13066
all species →		BASIC LEUCINE ZIPPER NUCLEAR FACTOR 1 BLZF1 PROTEINInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000139
all species →		Cellular ComponentGolgi membraneInterproscan
GO:0007030
all species →		Biological ProcessGolgi organizationInterproscan
GO:0043001
all species →		Biological ProcessGolgi to plasma membrane protein transportInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K27568BLZF1; golgin-45-Membrane traffickingko04131deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_046830-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
68TPM > 0
7Conditions
579.3Max TPM
78.9Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 15 90.15 481.67
holobiont · low.pH Control.temp 20 15 99.78 579.33
holobiont · control.pH_high.temp 20 15 73.43 295.27
holobiont · control.pH Control.temp 19 17 70.40 221.31
Whole organism 4 4 16.97 19.77
unannotated 1 1 12.94 12.94
live coral tissue/skeleton 1 1 22.85 22.85

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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