Detailed information of FUN_046860-T1 in Siderastrea siderea

Genomic Location: contig_65:3656230...3656928
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0010459 (this species only) · gene tree & orthology

 Pfam domain
No Pfam domain signature was recorded for FUN_046860-T1 in Siderastrea siderea.
 InterPro
InterPro termTypeDescriptionSource
IPR052619
all species →		FamilyBacteriophage lysozyme-likeInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR37406
all species →		T4-TYPE LYSOZYME 1-RELATEDInterproscan

 Gene Ontology
No Gene Ontology signature was recorded for FUN_046860-T1 in Siderastrea siderea.
Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K05414IFNA; interferon alpha-Cytokines and neuropeptidesko04052deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_046860-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
16TPM > 0
7Conditions
155.9Max TPM
6.2Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 0 0.00 0.00
holobiont · low.pH Control.temp 20 4 14.72 155.90
holobiont · control.pH_high.temp 20 4 6.54 100.54
holobiont · control.pH Control.temp 19 3 4.82 49.45
Whole organism 4 3 1.31 3.14
unannotated 1 1 0.20 0.20
live coral tissue/skeleton 1 1 0.89 0.89

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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