Gene detail

Detailed information of FUN_046862-T2 in Siderastrea siderea

Genomic Location: contig_65:3669643...3692793
NR annotation: no NCBI-NR hit recorded
Species abbreviation SSIDE · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

FUN_046862-T2

ATGGAAACTCGACTTTGTGTTGTGGGAAAAGAAAATGGAGAAAATAAagaactcatggaatcaattgAGGCTTTAAAGATTCCCGTAACAATTTCAGATAATGTCAAGGAAGAATTGCAAACAGCAACAGATAACATTGAAATAGTCTTTGTATGCGATCCGTTTGAAGGAGAAGATTTTGAGCTGTTACGAAAAGAAGAACAAAGAATCATTGGACCGCCGATTGTGCATACATGCGCTAAACAAGGACAAACCCTGCCATACAATTCAAGACCTCTTTACTGTTCAATTATGAGTAATCACATCATATGTTTCACTGGATTTCGAAAGAAAGAAGAACTTGGAAGACTTTGTAATTTGGTTCATCATATGGGTGGTAGTATACGCCGAGAGTTTAGTGGAAGAGTTACGCAGCTTGTTGCCAACTCAATTCATGGACAGAAATACCGGgCTGCTGTGAGTCTTGGAACGATGATTATGACAGTTGAGTGGGTGAGAAAGTGCTGGGAAAGACGCCATGAGCTGGGAGCAAGCGCAATGGATGATGGAATGGAAAAATACAAGATGATGCCATTTCATGGATGTTATCTTAGTTTCCATGGATTTTCTGATGATGAGAAGAAACACATGGAAGAATCAACAGAGCAGCAAGGTGGGGTCCCCGTGGAAGCCAGCGATCATCGCTGTACCCATTTGGTTGTAGAGGATAGTGTCACAGAACTACCAAGTGGTCTATTGGACCAGTCACATTGCCAAGCTGTCAAGCAAGAGTGGTTCTGGGCCAGTATTCACATGGATGCATGTGCTGATGAGTCACTCTATCACTTCACTGCCACAGATCCAACTGAGGCTGTTGCCCAGCAGACCACACCAGTCGGCAGCAGAAAGAGGAAACGCCGCAAACTGAAGGACACAGACCTCAGTGATTTGCTGTCCCCAGACTCCCCTCTTTTCCGTCCAAAGCGCAAGAGTGGTGATCTGTTGTCTGTGTCTGGATCTCTCCTGGAAAACTCCTTGGTGTCACCTGCCACGCCCAAAGAAACTCCCAGTGGAACAATCTCACCACTGACCACACCTGTTGCAGTTCCCCCTAAACCTCTGACGTCACGGCAGCAGGTAGCACTGGAACTACTACAAACAGAAAAGAACTACGTCGAGATACTTACAAACATCCTAAAgGTATTCAAAGAGCCGCTGGAAAAAGAACCGCGCGGGGGATCAATCATTTCAGCCGAGGATATCAAGACAATCTTTGGTCGCTTACCAGGCATTGTGGATGTTCACACGAAAATCATGAACGAGCTTGAAGCACTGGTGAGTGAATGGAAAGAGGACAAATGCATCGGAAACATAATCATTAATCACGCTGAGGAGTTAGTCAAAGTTTACCCACCATTCGTCAACTACTTTGAGATGACAAAGGAAACGGTAGTGAGATGTGATCGAGAATCGCCGAGATTTCACGCCTTTTTAAAGGCTTGTCTCAGCAGACCGGAGTGTGGACGACAGAGCCTGGCTGAACTGCTAATCAGACCCGTACAAAGACTTCCTAGCATGAATTTACTTCTCACAGATCTCCTAAAGCATACAGACAAGAAAAGCCCTGATCACACAGCTCTTGGCCTGGCGGTGGACTCACTCAAGAATGTTATGACTCACATAAACGAAgacaaaaggaaaacagaagGGCAAGTACAAATGTTCGAGATTCTCAGAGACGTCGATGGTTGTCCTGCTTACGTTTTATCTTCCCATCGTCTTTATGTGACTAAAGTGGATACATTCGAGCTGAGTGATACAATCTGCGGTAAAGGAGAAGCTGTAACCATCTTCCTCTTTAATGACAGCATGGAGGTAACAAAACGGCGCGGCTTGAAAATGATGAATAACGTGCCTCTACCGATGAAAAGCCCGGCAACTCGCACGCCGCAAAAGGCCTATAAGCACGTGAAATTCATGCCTCTGTCACATGTTAAACGGGTGGTGGACATTCGGGATAACGACGATTGTCAGAATTTGTTTGGTATCATCTACCGGTGCCCTCAGGAAATGAAAGAGAAATTGTTGATGTTTAGATTGGTGGGTgatgaaataaacaaacaggaaTGGCTTCAGAAACTTTCTAGTGGACTCGCAAATGCAGCTTGCATGGCAGACACGGAAAATTTTCTGACCACAGTCGACCCACACGAATTGATGTTGACTAAAAGTGATATGTCAAACGGAACCCTCAGTCGAGCAGTCAGAGTGGCGAAGCGAACGACAAGAAAGGTTGGCAGAGCGCTATCTATGAACAAGACGCCGAAAAAGGCGGGAAGTCTTAGACGAACGGCTTCCAATGTGTCGCCAACCATTCGCCGAGTACCCAGTGCCAGTCCTCTTATGCCGTCCTCGCTTCTCAACCAAGGATGTCTCAAAGGGACTAGGCAGAGAGCAACAAGCGTGCCAGCAGGCGAGCCCATGACTCCGTGA

Transcript

FUN_046862-T2

tccgAATGTGCCCGTACGCCTATGATCGGCCTCTGTCTAAGTTATTGAGAAAAACTAAGGTCCGGGGAGTAAAATACATTGCTGCTAActaataaaaataatgataacaatTGCTGAACAAGGGAGCAGGTGAATCAGTCTACCAAACTAAAGCACTCAGTTCGGACTTAACGGATGGTTTCGGTTGAACATCTGTTCCGGAAGGGTGCCTTTTAATCGCTTCAGATATtctattgtatttcgatttcgGTTCGGTTTTGATTGTGATAAAAATCTGAAGTTGTCTTGAGGTGAAATGTCATCTTTGGCAAAACAGGGAACTGAggggaaaatggaaaaatttcTGAATGCTATCTTGGTTACTATACCCCAAGTAGGCCAGCCAGGACTTTGGGAAAGGCAAACGTGTCGTCCTCGACTCACGAACGAAACAATTACTGACACGCGTGTACACTCAGGCGAAAAGTTCTCAGCTAAACCACGCTGGCATCATCTAGACAAATAAGAAATTGCAAAAATCTCTCAAATTATGGGTTCTAAGGATAATAGTTTAGAGATATTATATAACAAACGTCCCAAGAAAAGCGGATGAATACTAGAAATGGAGATATGTTGGAATTTCTAAATTGTATTACACAACGTAGATTTCGCTTTCTATTCGCCGCTGAACAGCAGACGAAAACGCGGCTCGATACCTCCAAATATGGAAATGCCCCATTCAACCGTTGTACAACCGCCATTTTTGAAAGGAAATTTCTTTTGGGTTTTACGCGGCTCGATGCTCGTAGAAAACAGGGCCAGTCTGCGTTCGATTTAGCAGTAGTTTCGAGAAAGGAAAAGTACAGAAGGATTCAACGTGACAAGCTGCCCTTTTTGACGAAATGGACGCTGACAATTCTGGAACTTTGGATGCCTCCGATCATCAGAATTCTTCACGTGAAGGTCAGTTTGATTTTGCTGTTTGACTAAGCTTATGCCTCTGTTTACAGTTAAATATTCCCATTCAAATTAATATAAGTCCTACTGACGTTTTTGTACGATCCAAGGTATACGTAGTACACGTTTATTATGCATCTCGTACCGTTCTATGTCCTAAATGTTGTGAGCTGATTTATGACTGGTTTGTGCGGCAAATGGATGGAATGGACATGTGCTTTCAATGTCCTGAGATCTGCCAGTAACTTTAATTCTTTTGATGTGAACTGTACTTGTTTGTCATGAACCCTATTTCTCAGAGCGAAACTGTTCCAATCGCTAATCCAATGATTAATCATCGATCGATGatcacaaaaaatgaaaaatacaaTTTGAAAAATCAATTTGATCGATGTTTGTGTGGCCAGCattttactgaatttttttcaacaTGGTTTTAAAATCTAATTTTAGGAAGCAATAGCTCCATAATGGAAACTCGACTTTGTGTTGTGGGAAAAGAAAATGGAGAAAATAAagaactcatggaatcaattgAGGCTTTAAAGATTCCCGTAACAATTTCAGATAATGTCAAGGAAGAATTGCAAACAGCAACAGATAACATTGAAATAGTCTTTGTATGCGATCCGTTTGAAGGAGAAGATTTTGAGCTGTTACGAAAAGAAGAACAAAGAATCATTGGACCGCCGATTGTGCATACATGCGCTAAACAAGGACAAACCCTGCCATACAATTCAAGACCTCTTTACTGTTCAATTATGAGTAATCACATCATATGTTTCACTGGATTTCGAAAGAAAGAAGAACTTGGAAGACTTTGTAATTTGGTTCATCATATGGGTGGTAGTATACGCCGAGAGTTTAGTGGAAGAGTTACGCAGCTTGTTGCCAACTCAATTCATGGACAGAAATACCGGgCTGCTGTGAGTCTTGGAACGATGATTATGACAGTTGAGTGGGTGAGAAAGTGCTGGGAAAGACGCCATGAGCTGGGAGCAAGCGCAATGGATGATGGAATGGAAAAATACAAGATGATGCCATTTCATGGATGTTATCTTAGTTTCCATGGATTTTCTGATGATGAGAAGAAACACATGGAAGAATCAACAGAGCAGCAAGGTGGGGTCCCCGTGGAAGCCAGCGATCATCGCTGTACCCATTTGGTTGTAGAGGATAGTGTCACAGAACTACCAAGTGGTCTATTGGACCAGTCACATTGCCAAGCTGTCAAGCAAGAGTGGTTCTGGGCCAGTATTCACATGGATGCATGTGCTGATGAGTCACTCTATCACTTCACTGCCACAGATCCAACTGAGGCTGTTGCCCAGCAGACCACACCAGTCGGCAGCAGAAAGAGGAAACGCCGCAAACTGAAGGACACAGACCTCAGTGATTTGCTGTCCCCAGACTCCCCTCTTTTCCGTCCAAAGCGCAAGAGTGGTGATCTGTTGTCTGTGTCTGGATCTCTCCTGGAAAACTCCTTGGTGTCACCTGCCACGCCCAAAGAAACTCCCAGTGGAACAATCTCACCACTGACCACACCTGTTGCAGTTCCCCCTAAACCTCTGACGTCACGGCAGCAGGTAGCACTGGAACTACTACAAACAGAAAAGAACTACGTCGAGATACTTACAAACATCCTAAAgGTATTCAAAGAGCCGCTGGAAAAAGAACCGCGCGGGGGATCAATCATTTCAGCCGAGGATATCAAGACAATCTTTGGTCGCTTACCAGGCATTGTGGATGTTCACACGAAAATCATGAACGAGCTTGAAGCACTGGTGAGTGAATGGAAAGAGGACAAATGCATCGGAAACATAATCATTAATCACGCTGAGGAGTTAGTCAAAGTTTACCCACCATTCGTCAACTACTTTGAGATGACAAAGGAAACGGTAGTGAGATGTGATCGAGAATCGCCGAGATTTCACGCCTTTTTAAAGGCTTGTCTCAGCAGACCGGAGTGTGGACGACAGAGCCTGGCTGAACTGCTAATCAGACCCGTACAAAGACTTCCTAGCATGAATTTACTTCTCACAGATCTCCTAAAGCATACAGACAAGAAAAGCCCTGATCACACAGCTCTTGGCCTGGCGGTGGACTCACTCAAGAATGTTATGACTCACATAAACGAAgacaaaaggaaaacagaagGGCAAGTACAAATGTTCGAGATTCTCAGAGACGTCGATGGTTGTCCTGCTTACGTTTTATCTTCCCATCGTCTTTATGTGACTAAAGTGGATACATTCGAGCTGAGTGATACAATCTGCGGTAAAGGAGAAGCTGTAACCATCTTCCTCTTTAATGACAGCATGGAGGTAACAAAACGGCGCGGCTTGAAAATGATGAATAACGTGCCTCTACCGATGAAAAGCCCGGCAACTCGCACGCCGCAAAAGGCCTATAAGCACGTGAAATTCATGCCTCTGTCACATGTTAAACGGGTGGTGGACATTCGGGATAACGACGATTGTCAGAATTTGTTTGGTATCATCTACCGGTGCCCTCAGGAAATGAAAGAGAAATTGTTGATGTTTAGATTGGTGGGTgatgaaataaacaaacaggaaTGGCTTCAGAAACTTTCTAGTGGACTCGCAAATGCAGCTTGCATGGCAGACACGGAAAATTTTCTGACCACAGTCGACCCACACGAATTGATGTTGACTAAAAGTGATATGTCAAACGGAACCCTCAGTCGAGCAGTCAGAGTGGCGAAGCGAACGACAAGAAAGGTTGGCAGAGCGCTATCTATGAACAAGACGCCGAAAAAGGCGGGAAGTCTTAGACGAACGGCTTCCAATGTGTCGCCAACCATTCGCCGAGTACCCAGTGCCAGTCCTCTTATGCCGTCCTCGCTTCTCAACCAAGGATGTCTCAAAGGGACTAGGCAGAGAGCAACAAGCGTGCCAGCAGGCGAGCCCATGACTCCGTGAAGAACTAGTCAGCAATACGCCACGGAACAAGTCGGTTCCCTGTttatttcttgttattttttacGTTGCTGGTTACCCCAACATCGACTCATTGGATGATTGAGAAAGACATTTTACATTCTTAGTCTTCTCGAACTGGTTTCGAGAAgttaaaacatgttttctttcCTTAATTAACGGTATAAACCTGCCGCCTCTCTCTTTGAAAGATTACGTCGTGAACGACGGGATGGTATATATCTGTAACGGGATTTCGGTTTCAAGGAACGTTAAATTCTTTTCAGGGAAGTGCTTCTTCTCCTTAAAAGAAGTACTAAACCAATGTGTTGGCTTTTCAGGGCGGAAAAATATGATAATAGTGCCAAATAATTGTTCCTTTCTGGCTACGGCATCACTTGTTCTCCGTTCGGAATCCTTGTACAGTCTCAACTGTCGAAAGACTTActcagtttattattattaattaagaGACAGCGGCCAacttgttcgaaagccgattaatAGAAATCCAGGGATGAGTTTCTGAAATCACGGTTTAcgcttttactcccaagagtgcctaaaatcaaaattcaagacaaatctcaaatttcattttgtaaca

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00621 all species →	RhoGEF	RhoGEF domain	Domain	Interproscan
PF12738 all species →	PTCB-BRCT	twin BRCT domain	Family	Interproscan
PF21242 all species →	ECT2_PH	ECT2, PH domain	Domain	Interproscan
PF21243 all species →	ECT2_BRCT0	ECT2, BRCT0 domain	Domain	Interproscan
PF00533 all species →	BRCT	BRCA1 C Terminus (BRCT) domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000219 all species →	Domain	Dbl homology (DH) domain	Interproscan
IPR026817 all species →	Family	Guanine nucleotide exchange factor Ect2	Interproscan
IPR001357 all species →	Domain	BRCT domain	Interproscan
IPR035899 all species →	Homologous_superfamily	Dbl homology (DH) domain superfamily	Interproscan
IPR036420 all species →	Homologous_superfamily	BRCT domain superfamily	Interproscan
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR049395 all species →	Domain	ECT2, PH domain	Interproscan
IPR049396 all species →	Domain	ECT2, BRCT0 domain	Interproscan
IPR001331 all species →	Conserved_site	Guanine-nucleotide dissociation stimulator, CDC24, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16777 all species →	PROTEIN ECT2	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005085 all species →	Molecular Function	guanyl-nucleotide exchange factor activity	Interproscan
GO:0000281 all species →	Biological Process	mitotic cytokinesis	Interproscan
GO:0005096 all species →	Molecular Function	GTPase activator activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005938 all species →	Cellular Component	cell cortex	Interproscan
GO:0007399 all species →	Biological Process	nervous system development	Interproscan
GO:0043547 all species →	Biological Process	positive regulation of GTPase activity	Interproscan
GO:0090630 all species →	Biological Process	activation of GTPase activity	Interproscan
GO:2000431 all species →	Biological Process	regulation of cytokinesis, actomyosin contractile ring assembly	Interproscan
GO:0035556 all species →	Biological Process	intracellular signal transduction	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K20704	ECT2, ARHGEF31; protein ECT2	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.