Gene detail

Detailed information of FUN_047214-T1 in Siderastrea siderea

Genomic Location: contig_66:2876999...2907654
NR annotation: no NCBI-NR hit recorded
Species abbreviation SSIDE · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

FUN_047214-T1

ATGCCAGCTGATCGCAAACCTATGCGGTTTGCTCATAGCGAAGGACATACGGATGTGTGTTATGATGAAAAGGGCGACTATCTCTTGACCTGTGGTTCTGATGGTGATGTGCGCATTTATAAAGACTTTGACGACAGTGATCCGGAATCAGTTAGGGCTGGCGATAATGTTACTATTTTGGCAGTGAAGAATAACAAAATTGTGACTGCATCAGACAATTCTGTCCAGGCCTTCACTTTCCCAGAGGGGTCTCCTGATGGAATTCTCACCAGATTTACAGCACCTGTCAATCACAtatgtttcaaccaatcaggaaCAGTTCTAGCAGCAGGGTCAAGTGATTTTAATGTGAAAGTGGTTACCATTGCCGATGGAAGCCAAAAGATACTGAAGGGTCACACAGCGCCTGTGCTGAGTGTTACAATGGATCCTAAAGACCAATATATTGCCTCATCAAGCTGTGATGGTACGGTGAAGATTTGGAAGCTGGAGGATCAGACTTCTGTAACAACACTTTCCATTCTTCCTAAAGTGAATGATGCAAGGATCTCAAAGACTTTGTGTCGTCTTGCTTGGCAGCCAGGCAGTGGCAAGtataTAGCTGTTCCAGTGGATCAAACAGTGAAGATCTACGAACGGGACAGctggaaaaatgttttcaacCTGGACAAAGATGGTCACAGTGAGCTTGTGTCTATTGTTTCTTGGTCTCCCTGTGGAAACTATATTGCATCTGCCAGTATCAATGGGGAAATGTTCATCTGGAAGCTGTCTTCCCAAACAGTCATAGAAAGAATTACCCATGAGAGTAATCAGAGGATCTGTGGTTTAGCGTGGAATCCTAAAGGAAACAAAGAACTTGCTTACGCTGATAATCAGGGTCAGTTTGGTGTGTGTGAGAATGTCCTACCTAAAGATGATgtGAAAAGTTCCAACACTGTTGCATCTGCTGACCAATCAATGGATGATAACCTGTTTGCTGGAGTCATGGATGGGGACAGTGATGATGAGCAGCTAATTgttggaaagaaaaaacaaaggaacaaaTCTAATGCTTGGATAGATGAGGAGGCTgaggatgatgacgatgatgatgaattcAAAGATATCCGCAAACTCAAGGCAGCCCTAGCAGCACCATTAGACTTTGGTGAAGGTGACAATGATATTGATGGTGGAGATACAGCGAGTGAAGTGTCTGCAGCTCAGGCTCCTAAGAAGGAGGTGATCCACACTCCTTTTGTTCCAACACTCCAGCCAGCATTCCAACCAGGCTCAACCCCAGTCCATCTCATGCACAGGTTTATGGTATGGAATTCAGTTGGGATTGTGCGATGTCACACAGAGGATGAAATATCATCAATTGAAGTGGAATTCCATGATGCAAGCACTCATCATCCCCTGCATTTGACTAATCATCTGAATCATTCAATGGCAGCACTGTCATCAACTGCTCTGCTGCTAGCTTGCAAAGCCCAGGAAGACTTACCAAGCAAGCTAGTCTGTGTCCATTTTGGAAGCTGGGATAATTCTAAGGAGTGGACTGTGGAAATGCCATCAGAAGAATCAATCCAAGCAGTGGCAATTGGCAGCTCTTTTGCTGCAGTTGCAACAAACAAACGCTTCTTGCGGGTGTTCACGATTGGCGGAGTGCAGCGCCACATCTTCAGCCTTCCTGGTCCCGTGGTGTGCATGTCAGGGTACAAGGATCAACTGATGGTCATGTATCATCTGGACAACCCTCTGCCTGGTGAGCAAGCATTGGCTGTCAAATTCCTGGACCTGAGGCAGAACCTTATTACTGAGGAAAGAGTGACGTTAAGTGAGAAGTCAACACTAGCATGGTTGGGGTTTGGTGAAGAAGGCACTCCAGTTACTGTTGATTCAGCAGGAGTCATTAGAGTATTGTCACGCTCCTTTGGCTCTACAGTGTGGTCTCCTGTATGCATTACTAAAAGCAATATGAAGAATAAGTCAGACAATTATTGGGTTGTTGGATTGGATGAGAAAAGCCAGCAGATCAGGTGTATCTACTGCAAGGGGTCCACGTACCCACCCACGCTGCCACGCCCTGTTCTTGTTCTCCTGCCATTACAACTTCCCTTGTGTGAAATGACCACAGAGAAAGGACAGCTTGAGGAAGAATATGTGCGATCAAACCTTCTGTTTGGAGAAGGCAATGAAGAAGACAGTGATGCATTCCAGGAAGCTTCATCACGCATCAAAACAGCACAGATCCAAGGGATCATGAAATTATTTGCTCTGGCTTGCAAAAGTGATAGAGAGTTCCGTGCAGTTGAGCTGTGTGAGTTACTACCAGATGCCCATTCTGTAAGCTTGGCAATAAAATATGCTGCACGCAGTCGTCGAATGAACCTCGCCAATCGACTTGATGACTTGGCTCGTAAGAAGGCAGAGCTGGAGGCTGGGGAGGGATCGGATGATGATTTCCAGCAAGCTGATTGGCCAGTCAGGCAGCCAAATATGTTGCAGCcaaggagacttggtcaagctCCCCGCACCGCATCAAGACAAACAGAACAGatggaagaggaagaggaggaggaagaagagaTGGAAGAGAATGGGATGGATGACGAAATAGAAGAAGATGAGCAACGAATTTCGAAAAGAAAAGGCTTAGCAAGACTAGACAGTCGAAATCTTGAACCCAGTCGTCCAAAATCCAACCCCATAATGAAGCCAAGGCCACCATCTTCTCCAATGCTGAGCCTCAGCTCAAGCCAAGGGCGCTCAAATCCCTTCAGGGTTGGAAGTCCCAACAAGAAAGCCTCAGGGAAGAGCTTCTTTGATAGCGTGGAAGAGGAGAAGAAATCTCTACTGATGAACAAAAACAAGATATCTCCTGAGTCCAAGGCAgcccagaaaaagaaaaagggaaaacaaaccaCTCTGTTGAAAACACCCCCTGGGAAAGAAAACCCTGCAACTGACGATAAAACTGCAACCGAGAAAGTACAGCAACTCGAAAAGAAATTTCCATCTGCGAAGAAAGTAAATGGTTTCAACGTCTGGTTTGAAGACAACAAAGAAGCCATCACAGAAGACAATTCAGAGCTTTCTGCCGCTGATCTTGTTAAATTTGCTATGCGGAAATGGAAATCACTGGGAGAGGAGGAGAAAGTGGAGTGGAATAAAAAAGCGAAGGATGCAACTAGTGGAACAGAACAAGACGACAAGAAGAGAAAACGGGAAAAATGTGATGATGAAAATGAGGACATTACTAGTAGACTTAATCAAGCCAAAAAGGCAAAAGAGATAACTGTTAATGGTGCAACATCCAAGTTGGCTGGATTTGCTTATAAAAAAGACTGa

Transcript

FUN_047214-T1

Protein

Gene family

Family type	Membership / link
Ubiquitin family	E3\|E3 adaptor Cullin RING\|CDC20 · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|DWD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400 all species →	WD40	WD domain, G-beta repeat	Repeat	Interproscan
PF12894 all species →	ANAPC4_WD40	Anaphase-promoting complex subunit 4 WD40 domain	Repeat	Interproscan
PF20946 all species →	Ctf4_C	DNA polymerase alpha-binding protein Ctf4, C-terminal domain	Domain	Interproscan
PF00505 all species →	HMG_box	HMG (high mobility group) box	Domain	Interproscan
PF12341 all species →	Mcl1_mid	Minichromosome loss protein, Mcl1, middle region	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR036910 all species →	Homologous_superfamily	High mobility group box domain superfamily	Interproscan
IPR024977 all species →	Domain	Anaphase-promoting complex subunit 4-like, WD40 domain	Interproscan
IPR048591 all species →	Domain	DNA polymerase alpha-binding protein Ctf4-like, C-terminal domain	Interproscan
IPR009071 all species →	Domain	High mobility group box domain	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR022100 all species →	Domain	Minichromosome loss protein Mcl1, middle region	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19932 all species →	WD REPEAT AND HMG-BOX DNA BINDING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0000278 all species →	Biological Process	mitotic cell cycle	Interproscan
GO:0003682 all species →	Molecular Function	chromatin binding	Interproscan
GO:0006261 all species →	Biological Process	DNA-templated DNA replication	Interproscan
GO:0006281 all species →	Biological Process	DNA repair	Interproscan
GO:0043596 all species →	Cellular Component	nuclear replication fork	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11274	WDHD1, CTF4; chromosome transmission fidelity protein 4	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.