Detailed information of FUN_047225-T1 in Siderastrea siderea

Genomic Location: contig_66:3073921...3094474
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF14727
all species →		PHTB1_NPTHB1 N-terminusRepeatInterproscan
PF14728
all species →		PHTB1_CPTHB1 C-terminusFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR028073
all species →		DomainPTHB1, N-terminal domainInterproscan
IPR028074
all species →		DomainPTHB1, C-terminal domainInterproscan
IPR026511
all species →		FamilyParathyroid hormone-responsive B1Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR20991
all species →		PARATHYROID HORMONE-RESPONSIVE B1 GENEInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0016020
all species →		Cellular ComponentmembraneInterproscan
GO:0034464
all species →		Cellular ComponentBBSomeInterproscan
GO:0060271
all species →		Biological Processcilium assemblyInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K19398BBS9; Bardet-Biedl syndrome 9 protein-Cilium and associated proteinsko03037deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_047225-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
69TPM > 0
7Conditions
370.3Max TPM
73.4Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 16 67.50 234.98
holobiont · low.pH Control.temp 20 15 75.74 253.57
holobiont · control.pH_high.temp 20 15 75.49 257.88
holobiont · control.pH Control.temp 19 17 91.88 370.30
Whole organism 4 4 21.98 25.92
unannotated 1 1 11.35 11.35
live coral tissue/skeleton 1 1 20.59 20.59

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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