Detailed information of FUN_047909-T1 in Siderastrea siderea

Genomic Location: contig_68:3071599...3116710
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
No Pfam domain signature was detected for FUN_047909-T1. This gene does have a gene model — the search simply returned no hit.
 InterPro
InterPro termTypeDescriptionSource
IPR016024
all species →		Homologous_superfamilyArmadillo-type foldInterproscan
IPR033060
all species →		FamilyIntegrator complex subunit 7Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR13322
all species →		C1ORF73 PROTEINInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0016180
all species →		Biological ProcesssnRNA processingInterproscan
GO:0032039
all species →		Cellular Componentintegrator complexInterproscan
GO:0034472
all species →		Biological ProcesssnRNA 3'-end processingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for FUN_047909-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_047909-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
20TPM > 0
7Conditions
15.3Max TPM
1.6Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 3 0.27 2.61
holobiont · low.pH Control.temp 20 2 0.50 5.25
holobiont · control.pH_high.temp 20 5 1.45 12.47
holobiont · control.pH Control.temp 19 4 1.04 7.97
Whole organism 4 4 13.31 15.35
unannotated 1 1 11.48 11.48
live coral tissue/skeleton 1 1 8.73 8.73

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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