Detailed information of FUN_048009-T1 in Siderastrea siderea

Genomic Location: contig_68:4337475...4344723
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF06573
all species →		ChurchillChurchill proteinFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR009508
all species →		FamilyTranscription activator, ChurchillInterproscan
IPR038543
all species →		Homologous_superfamilyChurchill superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR31931
all species →		PROTEIN CHURCHILLInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0007275
all species →		Biological Processmulticellular organism developmentInterproscan
GO:0008270
all species →		Molecular Functionzinc ion bindingInterproscan
GO:0045893
all species →		Biological Processpositive regulation of DNA-templated transcriptionInterproscan
GO:0008543
all species →		Biological Processfibroblast growth factor receptor signaling pathwayInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for FUN_048009-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_048009-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
59TPM > 0
7Conditions
2,029.3Max TPM
287.6Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 13 211.55 649.97
holobiont · low.pH Control.temp 20 14 402.27 1,982.93
holobiont · control.pH_high.temp 20 11 178.41 974.67
holobiont · control.pH Control.temp 19 15 440.16 2,029.28
Whole organism 4 4 44.23 50.70
unannotated 1 1 28.83 28.83
live coral tissue/skeleton 1 1 32.47 32.47

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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