Detailed information of FUN_048450-T2 in Siderastrea siderea

Genomic Location: contig_70:1782191...1805315
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00149
all species →		MetallophosCalcineurin-like phosphoesteraseDomainInterproscan
PF04152
all species →		Mre11_DNA_bindMre11 DNA-binding presumed domain DomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR007281
all species →		DomainMre11, DNA-bindingInterproscan
IPR003701
all species →		FamilyDNA double-strand break repair protein Mre11Interproscan
IPR004843
all species →		DomainCalcineurin-like phosphoesterase domain, ApaH typeInterproscan
IPR038487
all species →		Homologous_superfamilyMre11, capping domainInterproscan
IPR041796
all species →		DomainMre11 nuclease, N-terminal metallophosphatase domainInterproscan
IPR029052
all species →		Homologous_superfamilyMetallo-dependent phosphatase-likeInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR10139
all species →		DOUBLE-STRAND BREAK REPAIR PROTEIN MRE11Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0004519
all species →		Molecular Functionendonuclease activityInterproscan
GO:0005634
all species →		Cellular ComponentnucleusInterproscan
GO:0006302
all species →		Biological Processdouble-strand break repairInterproscan
GO:0030145
all species →		Molecular Functionmanganese ion bindingInterproscan
GO:0004520
all species →		Molecular FunctionDNA endonuclease activityInterproscan
GO:0008296
all species →		Molecular Function3'-5'-DNA exonuclease activityInterproscan
GO:0030870
all species →		Cellular ComponentMre11 complexInterproscan
GO:0016787
all species →		Molecular Functionhydrolase activityInterproscan
GO:0000014
all species →		Molecular Functionsingle-stranded DNA endodeoxyribonuclease activityInterproscan
GO:0000723
all species →		Biological Processtelomere maintenanceInterproscan
GO:0000724
all species →		Biological Processdouble-strand break repair via homologous recombinationInterproscan
GO:0006303
all species →		Biological Processdouble-strand break repair via nonhomologous end joiningInterproscan
GO:0007095
all species →		Biological Processmitotic G2 DNA damage checkpoint signalingInterproscan
GO:0031573
all species →		Biological Processmitotic intra-S DNA damage checkpoint signalingInterproscan
GO:0035861
all species →		Cellular Componentsite of double-strand breakInterproscan
GO:0042138
all species →		Biological Processmeiotic DNA double-strand break formationInterproscan
GO:0097552
all species →		Biological Processmitochondrial double-strand break repair via homologous recombinationInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K10865MRE11; double-strand break repair protein MRE11-DNA repair and recombination proteinsko03400deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_048450-T2 across 85 RNA-seq samples of Siderastrea siderea. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
0TPM > 0
7Conditions
0.0Max TPM
0.0Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 0 0.00 0.00
holobiont · low.pH Control.temp 20 0 0.00 0.00
holobiont · control.pH_high.temp 20 0 0.00 0.00
holobiont · control.pH Control.temp 19 0 0.00 0.00
Whole organism 4 0 0.00 0.00
unannotated 1 0 0.00 0.00
live coral tissue/skeleton 1 0 0.00 0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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