Gene detail

Detailed information of FUN_048476-T1 in Siderastrea siderea

Genomic Location: contig_70:2051777...2066270
NR annotation: no NCBI-NR hit recorded
Species abbreviation SSIDE · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

FUN_048476-T1

ATGGCACCTTTTTCCGCGAGCGGTAACGGGGAAGGATTTTGGGGGGAGGTGACGTCTACACTCGACTGGTGCGAGGAGAACTACGCTGTTTCTGCATTTCTTGCTGAATTCTggAACACAATTAGTAACTGGCTTTTCTTGATCCCACCTGCATTTGGAGCATTTTTGTCATGGAAAAATAAGCTGGAGCGACGCTACATTCTATCATTTATTACTTTATTTGTTGTTGGGATAGGATCATTCTGTTTTCATGCTACACTGTTGTACGAAATGCAGCTTCTTGATGAACTTCCCATGATCTACTGTACTTGTGTTATGATATTTTGCATTATTCAATGTTCTTATCGCCCACGGCAGCTCAACACCACACTCACGTTAGTCCTTGTTGTCTGTTGCGCTATGATAACTTTGGTGTATTTGACCATTGTGAATCCTCTCATCTTCCAGTGGGCATATGGCATCCTTGTTACTGTTCTTGTTATTGGAGCATTCGTGGCTTGTAGAAAACACAGAGGTTCATGGAAACTGCTAACCGTATCTCTTGTGAGCTATGGAATCGGATTTATCATTTGGAACATCGACAACAACTTTTGTTCATATGTGAGGGAAGCACGGAATCAACTCCCACCTTTCCTCAGACCATTTTTACAGCTACATGCGATATGGCACACGCTGGCAGCAATAGGTTCCTACTATCACATTCTATTCAGCATTGATCTAAGGTTACGATGTCTTGGGAGAGGTCCAAATCTCAAGCTTTATCGGGAATGGCTTCCATTTATTTACCCTGCTAAAGATGCTGTATCAAGTGGTATTCTACCAACCGTCACGCACAATGCCGCCATATTTCTGCTGCTGTTTGGTCTCGTCATAAAATTGTTGAAATAACAAATGTTTTAGGTAGACCACTACGTTAAAAGGtaatttaacaatttaaaatatttgCTAGTTAATTCTGGACTGTAAGatacaagaaaaggaaaaaaaggcgGTGCGGTGATAAAGAATGTTCTTTTGACAATTATGCTTCCTATTCGCGCGCTCATGCCGCCTGTTCACAGCACAAACTGAGCGGAAAACAGTGGAGCGGTTTTCTACTGGTTTTCTTTACCacaaccaaagtaattactctcgCCGATCATACCAAACGTAATTGACACaataagccaatcagaactGGAAGCAAGACGTGCAGCCGGtgcaagcgcgggaaaacgtggaACCCGTGCCAAGTGCACCAATCAAAATTCAGCGCACAAAAGTGCAGCCGCTACCAAGCTGGCGTTGGAACGCAGTCGAAACACGCATCAGGCAAATGTcggttttcttatttttgttatGATTCACGATTAGGTCTCGAAAACTCAGCAGGTCTCTCATATATGACTGGCTGATGCACGTTGAAAGAGTTTTGTGAGAGCAGCTGACAATTACTATTGATAaccaattgaaaaccgctctgaGGCGTAATTTTATCCGTCTAGCAGATTACTAATCTTTCGTAATCTGCCAAACACCAGTTTTTGTGTTCGCGGTAAAATTCGAGTTCAAATCGCGACTAAAATCAATGTAGGTCGTAAGGGAAGGGGGTAGACGTAGTTAAAGAAGCAGGTTTTTTGTTTCGTTCTCCCCATTTCCACTTTGGAAAATACTTCCCGATATATATCATCTGCTTGGTTACACTTTGCTAGTGAGATGTCGTTCACGGACTCCGTATAACAAACAGCGCCACAGAAAAGTAGTGCTCAATAGCTGTCACCTGAATATTGGTTTCATCCACCGACTCAAACGTTATAACCATCCTAAACAGCAtagtgctgctcagtagctttcatttgaatggtcacactttaggatttcacccacaggctcaaaagtaagaactacgttatacagcataataaacagcaccacaggaaagtactgctcagtagctttcatttgaatgctcacactttagcatttcatccacagactcaaaagttagaatcaccttgtacaacaataaacagtaccaaaggaaagtactgctcagtagctttcttttGGAGAATAGTCACATTCCACTCATCTCTTGATCCGCAACTTCAAAATCGTTTTACTCTTCGCTTCGTCCATTGTTTGCATACAAAAAATATATGGTAATCACAGTTGATTATCAGAAGATAAAGTAAATTATATAGGTAATTATTCATGAATTTTCATACCGCAAGTAGTATAACGAAATGGCCGAAAATTACGGAACAAGGAAAGATGTAGGATAGTACGCAGCGGCTCATTTGTTTAAATGAAGCTGAGGGGTTTGTAAGCGAAGCAATTTTTCACTATAATCTCAGGGTTTTCTTACTATCTTTCGTAATCATCGTTGTATGAGtggtaaaaatgaaattatttaGCTTTAATATTAATTGCCGGGTAATAGATAGATATTTTCATAAATTTGTAAACTAAACAGAAATTGTCACAATTGTATTCTCGTGTGGACGATAAATATGAAATTTAATGATAGGTTAAGCAAAGCAAATCTATTCTCGCCCGTGTGGGTGTAAGTTATTTATTCAAAAATTCACCAGGTGTCATGCAGGAAAGTAGCCGATTTTTTTCTCTTCCTGGGTAGTCGAGTGAGAAGTCTACGCGACCTTTACGAGCATAAATTGGTTGCTGCGAGAAACCTCGACTGGCAGTACACTCGGTAATTTCAAGGGTTCTTATTTTGGGATAATAACAGAGTCAAGAGGGGTAaacttcgttcccagggccCTCTGTCTTCATCCCTCCTTTCTCGAGGGGAAGAGAGAGGatcctggaaacgaggttgaagAGGgctattaaatttcgcgatatCATATCGTCATTGTTTAATCACTACAGGAAACTTTTCTTTTCTGGGCAAAGCATCGTAGAACAAACTTGTATTTGCAAACGCAGTTTCCAAACGAAATTCATGGTAATAGTTTTCTGAACTGAGGGAAAGTTCAACCACTGAAACCATAGTATCATCTAGGCCATTCAGGACTGATTAGAAACAAGTTTGCAGCCGGTGCCGAGCGCAGGAAATCGCTTTGCTTAGCTTTGCacctgattggttaagaaaacgAGTGTGTTTTCTCTGATTGGTTAGAGCATGTTGCACGCTTTGCAGgaggttttaaccaatcagtGAATTGGGGAGGCACACAACCAAGGCAAGCGCATAAAATTTCTTTCAACACAATCGACAGACAAACCATTGTAACGACACAAACTAAAGTTTTTGCAAACAGAAACAGTTGCCAACACTTTGTCAGACTGGTTTCACGACGCACACAACCACAGGCACGCTTACTTGTAATGCAAATACAGTCGTAAACTTCAGTTTTCCTTGTAAAAGCGCGCTATTCGTGTATTTCTTAGTGTCCTTTAATGGAGATGTGTTCTTATTTAATAGTTGTACGTTTATGTACGTAAGGTGATAATATAAACAAGTCGATGTACTGTTTAAGTTAACAGATATTTATTCCTTTTACAAGAACGCTAAAATATTTAGCGTTAAAGTAAAGTATTTTCATTAACATAAGAATATTTTAATACAGCGAAAGTAAATGCAATACATCGACTTTAGTGTTTGTGCAGTGTTCCTAAATATTTTGTTCTTGAACATTGAAGTTGTCACTATTTGTATGGAGCATATATAATTTGTATTGCATTATCTTTTGGCATTTTAACATATTTATTGTATTCATTGTCATTTGAGTCAGGGCATTGAGTGAGAAATAAAAGAGTTTGTTTCGCAAGAGTTTTGTAGTTATTGTACCGTAGctatataaaaaataaaattgacaaGGCTCGGTTGTTTCAGAACTGAAGTAACATTTATACGGGATTAAAATTTGGGTGCGGCTCCATTTCCCCGGCTtctaaaaccgcaaaaattacAGTTTGAAAGTGGCAAAAGGACAAATTAAGAATTAACAGTAATCCACATCGCGGCAACAAGTAAGCTTTATTCTAATaaaacgaggaaacattgttgccaAAACATTGTTGCCAAAACATCTTTCCCTAAATGTTTCCTTGTTTGTGAGCACctgaaacatttgttgcggaaacatttttTGCTTCCGAAAAACGAAAACTGTTTCTGATTTTT

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05875 all species →	Ceramidase	Ceramidase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008901 all species →	Family	Alkaline ceramidase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46187 all species →	ALKALINE CERAMIDASE 3	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006672 all species →	Biological Process	ceramide metabolic process	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0016811 all species →	Molecular Function	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides	Interproscan
GO:0030176 all species →	Cellular Component	obsolete integral component of endoplasmic reticulum membrane	Interproscan
GO:0070774 all species →	Molecular Function	obsolete phytoceramidase activity	Interproscan
GO:0071602 all species →	Biological Process	phytosphingosine biosynthetic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K04711	ACER3, YDC1; dihydroceramidase	EC:3.5.1.-	Sphingolipid metabolism	ko00600	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.