Detailed information of FUN_048501-T1 in Siderastrea siderea

Genomic Location: contig_70:2498581...2499648
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF07801
all species →		DUF1647Protein of unknown function (DUF1647)FamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR012444
all species →		FamilyProtein of unknown function DUF1647Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR31389
all species →		LD39211PInterproscan

 Gene Ontology
No Gene Ontology signature was detected for FUN_048501-T1. This gene does have a gene model — the search simply returned no hit.
Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for FUN_048501-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_048501-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
12TPM > 0
7Conditions
245.9Max TPM
4.7Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 1 0.48 9.58
holobiont · low.pH Control.temp 20 2 1.02 11.77
holobiont · control.pH_high.temp 20 1 2.02 40.41
holobiont · control.pH Control.temp 19 2 13.68 245.86
Whole organism 4 4 11.08 15.77
unannotated 1 1 11.67 11.67
live coral tissue/skeleton 1 1 12.68 12.68

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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