Detailed information of FUN_048604-T1 in Siderastrea siderea

Genomic Location: contig_71:101598...138977
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF07645
all species →		EGF_CACalcium-binding EGF domainDomainInterproscan
PF16575
all species →		CLP1_PmRNA cleavage and polyadenylation factor CLP1 P-loopDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR000152
all species →		PTMEGF-type aspartate/asparagine hydroxylation siteInterproscan
IPR000742
all species →		DomainEGF-like domainInterproscan
IPR001881
all species →		DomainEGF-like calcium-binding domainInterproscan
IPR027417
all species →		Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR049883
all species →		DomainNOTCH1 EGF-like calcium-binding domainInterproscan
IPR018097
all species →		Conserved_siteEGF-like calcium-binding, conserved siteInterproscan
IPR009030
all species →		Homologous_superfamilyGrowth factor receptor cysteine-rich domain superfamilyInterproscan
IPR045116
all species →		FamilyPolyribonucleotide 5-hydroxyl-kinase Clp1/Grc3Interproscan
IPR032319
all species →		DomainPolyribonucleotide 5'-hydroxyl-kinase Clp1, P-loop domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR12755
all species →		CLEAVAGE/POLYADENYLATION FACTOR IA SUBUNIT CLP1PInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005509
all species →		Molecular Functioncalcium ion bindingInterproscan
GO:0000448
all species →		Biological Processcleavage in ITS2 between 5.8S rRNA and LSU-rRNA of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)Interproscan
GO:0005634
all species →		Cellular ComponentnucleusInterproscan
GO:0006396
all species →		Biological ProcessRNA processingInterproscan
GO:0051731
all species →		Molecular Functionpolynucleotide 5'-hydroxyl-kinase activityInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for FUN_048604-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
TOP