Gene detail

Detailed information of FUN_048663-T1 in Siderastrea siderea

Genomic Location: contig_71:1198747...1213107
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

FUN_048663-T1

caccgctgcttgtgttttattcttaatcaagctacgatggcctaaGAACAAAAGCTTTCTTAGTTCTTGGGACATCGTGCAACAGGATCCAGAAAATGGAAGAGGATTTTCGCCTGCGCTTGAGTGGAGGAATGTAACTACTATTTGGCTATTAACGCTAGAGCAGCTTCCGGTAGCCTAAGGGCGGGGAAGTGGGAGGGACCGGGATACTCATCCCCAGGTTCCTCTCTTCACTGGTGGTGTCGCAAAAGACTCATGGGAAAGTTTGCCGGCGGTGTTGTTTGTTGAGACGATACTCGAGAAGTTGATGAATTAAATGATGGCAGCGGATAAGAAGTCTTGCGCTTGGAGTTTCAACTTGGGGTCAAAACCGAAGGCAAAGAAGCATAACTTTGACCTTTGTCGTCTAAATTCAAGGGACGAACAAAGTTCTACAGGAATGGCGAATGATGCAAACGCGCAAAACTTGCTGGTCGTGTTCGGAGCATCAGGAGATCTTGCAAAGAAAAAGATTTATCCGACGTTATGGTATTTATACAAGGATGAGCTCATTCCAAAATCCACCAAGATCATTGGGTATGCTCGGTCGGATTTGACAGTGGACAAACTAAGAGCCAAAACAGAGCCTTTTATGAAGCTGAAAGAAGATGAAAAGGACAGAGTATCGCAGTTCTTCAAAAACTGTTATTATGTGCAAGGTCCTTACAATGAAGACTCAGGTTTTAAGAAACTGAATGTAGAGCTTGACAAACTTGGTGAAGGAAAAGATGCAGTCAACAGGCTGTTTTACCTGGCGCTTCCACCATCAGTCTTCATTGATGCATCGGAGAATATCAAAAAATACTGCATGGGCTCCAAGGGGTGGAACAGAGTGGTCATAGAAAAACCATTTGGTAAAGACTCCGAGAGTTCTGCTGAATTGTCAAATCATCTGGCATCACTGTTTCCCGAGGATTCAATGTACCGTATTGATCATTACCTTGGAAAGGAAATGGTGCAGAATCTTATGGTGTTGCGGTTTGGTAACCGAATCTTTGGTCCAGTATGGTGTAGAGAGAGCATCAAGAGTATAATAATCACATTCAAAGAACCTATTGGTACTTACGGAAGGGGAGGCTACTTTGACGAGTATGGAATCATCAGGGATGTGATGCAAAACCATCTATTGCAGGTTCTCTGTTTGGTCGCCATGGAAAAACCTGCCAGCAAAAAATCTGAAGATCTACGAAATGAGAAGGTAAAAGTCCTGAAGTGCATGAGTCCAATTGAATTAAAAAACTCTGTACTGGGACAGTATGTTGGAAACCCTGAGGCTGAAGGTGACGGCAAGTTTGGTTACCTTGATGACCCCACCGTGCCTAAGGGTTCCATCACCCCTACGTTTGCCACCTGTGTGACATATATACACAATGAAAAGTGGGATGGTGTCCCATTTATTCTCAAGTGTGGCAAAgCCCTGAATGAACGCAAGGCAGAGGTTCGCATTCAATTTACAGATGCTCCTGGAGATATCTTTGAAGGGAAATGCAAACGAAATGAGCTGGTGGTCAGGCTTCAGCCAAATGAGGCTGTTTATGTGAAGCTGATGATCAAGGAAGCAGGGATGTCTTTTCAGCCACATGAATCAGAGCTGGACTTAACCTATGCTGAACGATACAAGCATGTGAAGATGCCAGATGCTTATGAACGGCTCATCATGGATGTGATCTCTGGAAACCAGAGCCATTTTGTCAGAAGTGACGAGCTTGCTGAAGCCTGGAGAATTTTCACTCCTCTGTTGCATCAGATTGAAAGGGAAAAAATCAAACCAATTCCTTACAAATTTGGAAGTCGAGGTCCCTTGGAGTCTGACACCCTCATTAAAGAGAGTGGATTTGTTTACAGTGATACTTACAAGTGGGAAAAGACACCAAAAAAATAGATACTATTGACCTGAAGgaGAAAAGCATGATTGAAGCCCTCTCCTGTAGTTCCTGACCATTTTTTCTGGATGGATGCCATCAGAAAGGATGGACAGTAGATTTACATCAACAGCTCACTTAACAAAAGTTACactacatgtaattatttttttaaaaaatgtttgtcATACTTGCAAGAGTCCTCTCATATATTGTGTTTTACACAATGTGATTTACTTGACAATGTATAATTCATCCACTCATTCATATTATTTAACTAATTTCtagttttatttttccttgAAGAGTAAGTTACAAGAATATAATATTGATTACATGTAGTTGTGGCTCTTTTAAGGTATATCTGCTATCGGACAGTAGCATTATCAGTTAGGCATAAAAAGAAATTAACTAAAGATAGGAtttagttattttaaaattaattgacCATACATTATGTTTTCCATTAAGAGGTGGGAAATAAACATTTTGAGCTAAGCATGTTAGcagatttttttaaagaactAATTGAAAAGTACACTACAGTCTGTCTTAAACTAAATTCAAgtactattttaatttttttttataatttcaacAAGGCTTTGTCAGGACAACTGAAAAGTAATATTGCCTGAAACTTAGTAGTGATCACCTACAAAATGAAACCAAACCATTTGACAATGTTGGTAGTGGTGATGGAAAAAGTTTTGACTGGGTTAGTGGTTAGAGGACCTTCCAAAATTACACAACATGCAACCCCCAGGGACCCACGTTAACTAACAGAGCCTCCTCGACAGGCCCTTTGCATGATTTGGTCATGTTGTACAAAACTTGCCGTTCCAGATGGCAAGCAGATAAGTGCAGTGGGACATAAACGATAAAGAGATGGCAGCCTATATTTAgatgtgaattt

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00479 all species →	G6PD_N	Glucose-6-phosphate dehydrogenase, NAD binding domain	Domain	Interproscan
PF02781 all species →	G6PD_C	Glucose-6-phosphate dehydrogenase, C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR022674 all species →	Domain	Glucose-6-phosphate dehydrogenase, NAD-binding	Interproscan
IPR019796 all species →	Active_site	Glucose-6-phosphate dehydrogenase, active site	Interproscan
IPR001282 all species →	Family	Glucose-6-phosphate dehydrogenase	Interproscan
IPR022675 all species →	Domain	Glucose-6-phosphate dehydrogenase, C-terminal	Interproscan
IPR036291 all species →	Homologous_superfamily	NAD(P)-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23429 all species →	GLUCOSE-6-PHOSPHATE 1-DEHYDROGENASE G6PD	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006006 all species →	Biological Process	glucose metabolic process	Interproscan
GO:0016614 all species →	Molecular Function	oxidoreductase activity, acting on CH-OH group of donors	Interproscan
GO:0050661 all species →	Molecular Function	NADP binding	Interproscan
GO:0004345 all species →	Molecular Function	glucose-6-phosphate dehydrogenase activity	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0009051 all species →	Biological Process	pentose-phosphate shunt, oxidative branch	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00036	G6PD, zwf; glucose-6-phosphate 1-dehydrogenase	EC:1.1.1.49 EC:1.1.1.363	Exosome	ko04147	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_048663-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples

61TPM > 0

7Conditions

763.4Max TPM

171.4Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
holobiont · low.pH_high.temp	20	13	115.23	586.65
holobiont · low.pH Control.temp	20	16	266.48	604.24
holobiont · control.pH_high.temp	20	13	106.20	468.04
holobiont · control.pH Control.temp	19	13	234.16	763.44
Whole organism	4	4	55.85	73.04
unannotated	1	1	70.21	70.21
live coral tissue/skeleton	1	1	70.76	70.76

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR22214414	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	586.65
SRR22214409	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	469.93
SRR22214421	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	267.86
SRR22214419	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	190.56
SRR22214413	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	181.77
SRR22214417	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	145.59
SRR22214404	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	112.68
SRR22214423	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	98.95
SRR22214405	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	74.98
SRR22214406	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	61.28
SRR22214410	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	61.21
SRR22214402	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	31.52
SRR22214408	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	21.55
SRR22214403	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	0.00
SRR22214407	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	0.00
SRR22214412	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	0.00
SRR22214415	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	0.00
SRR22214416	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	0.00
SRR22214418	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	0.00
SRR22214420	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	0.00
SRR22214435	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	604.24
SRR22214427	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	547.01
SRR22214439	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	511.00
SRR22214424	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	509.72
SRR22214445	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	482.20
SRR22214431	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	410.39
SRR22214442	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	393.29
SRR22214426	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	376.74
SRR22214434	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	297.11
SRR22214441	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	230.08
SRR22214428	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	210.19
SRR22214436	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	190.29
SRR22214443	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	180.96
SRR22214430	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	165.35
SRR22214429	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	137.74
SRR22214437	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	83.23
SRR22214425	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	0.00
SRR22214432	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	0.00
SRR22214438	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	0.00
SRR22214440	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	0.00
SRR22214449	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	468.04
SRR22214452	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	434.59
SRR22214446	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	284.77
SRR22214453	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	207.99
SRR22214457	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	172.64
SRR22214456	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	144.94
SRR22214467	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	97.42
SRR22214465	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	88.99
SRR22214454	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	79.66
SRR22214458	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	71.54
SRR22214463	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	33.04
SRR22214464	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	29.55
SRR22214459	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	10.75
SRR22214447	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	0.00
SRR22214448	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	0.00
SRR22214450	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	0.00
SRR22214451	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	0.00
SRR22214460	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	0.00
SRR22214461	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	0.00
SRR22214462	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	0.00
SRR22214433	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	763.44
SRR22214470	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	687.05
SRR22214455	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	627.05
SRR22214524	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	575.05
SRR22214492	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	519.07
SRR22214546	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	380.03
SRR22214535	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	201.83
SRR22214468	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	141.42
SRR22214506	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	130.23
SRR22214548	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	121.32
SRR22214400	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	115.86
SRR22214471	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	94.09
SRR22214481	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	92.60
SRR22214411	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	0.00
SRR22214422	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	0.00
SRR22214444	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	0.00
SRR22214466	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	0.00
SRR22214469	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	0.00
SRR22214547	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	0.00
SRR14295604	Whole organism	Whole organism	not recorded	not recorded	SRP315757	73.04
SRR14295600	Whole organism	Whole organism	not recorded	not recorded	SRP315757	62.52
SRR14295603	Whole organism	Whole organism	not recorded	not recorded	SRP315757	53.67
SRR14295601	Whole organism	Whole organism	not recorded	not recorded	SRP315757	34.17
ERR12861049	unannotated	not recorded	not recorded	not recorded	ERP159209	70.21
SRR12454619	live coral tissue/skeleton	live coral tissue/skeleton	not recorded	not recorded	SRP277390	70.76

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.