Detailed information of FUN_049245-T1 in Siderastrea siderea

Genomic Location: contig_73:2852821...2871884
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF13385
all species →		Laminin_G_3Concanavalin A-like lectin/glucanases superfamilyDomainInterproscan
PF00088
all species →		TrefoilTrefoil (P-type) domainDomainInterproscan
PF12248
all species →		Methyltransf_FAFarnesoic acid 0-methyl transferaseFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR000519
all species →		DomainP-type trefoil domainInterproscan
IPR044913
all species →		Homologous_superfamilyP-type trefoil domain superfamilyInterproscan
IPR022041
all species →		DomainFarnesoic acid O-methyl transferaseInterproscan
IPR013320
all species →		Homologous_superfamilyConcanavalin A-like lectin/glucanase domain superfamilyInterproscan

 PANTHER
No PANTHER signature was detected for FUN_049245-T1. This gene does have a gene model — the search simply returned no hit.
 Gene Ontology
No Gene Ontology signature was detected for FUN_049245-T1. This gene does have a gene model — the search simply returned no hit.
Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for FUN_049245-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_049245-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
36TPM > 0
7Conditions
87.6Max TPM
14.3Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 9 16.22 57.60
holobiont · low.pH Control.temp 20 5 12.08 87.64
holobiont · control.pH_high.temp 20 9 18.35 58.29
holobiont · control.pH Control.temp 19 8 14.79 70.47
Whole organism 4 3 0.53 1.06
unannotated 1 1 0.41 0.41
live coral tissue/skeleton 1 1 0.29 0.29

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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