Detailed information of FUN_049455-T2 in Siderastrea siderea

Genomic Location: contig_74:2784293...2795884
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000985 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00080
all species →		Sod_CuCopper/zinc superoxide dismutase (SODC)DomainInterproscan
PF00403
all species →		HMAHeavy-metal-associated domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR006121
all species →		DomainHeavy metal-associated domain, HMAInterproscan
IPR001424
all species →		DomainSuperoxide dismutase, copper/zinc binding domainInterproscan
IPR036423
all species →		Homologous_superfamilySuperoxide dismutase-like, copper/zinc binding domain superfamilyInterproscan
IPR024134
all species →		FamilySuperoxide dismutase (Cu/Zn) / superoxide dismutase copper chaperoneInterproscan
IPR036163
all species →		Homologous_superfamilyHeavy metal-associated domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR10003
all species →		SUPEROXIDE DISMUTASE CU-ZN -RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0046872
all species →		Molecular Functionmetal ion bindingInterproscan
GO:0006801
all species →		Biological Processsuperoxide metabolic processInterproscan
GO:0005507
all species →		Molecular Functioncopper ion bindingInterproscan
GO:0016532
all species →		Molecular Functionsuperoxide dismutase copper chaperone activityInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for FUN_049455-T2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_049455-T2 across 85 RNA-seq samples of Siderastrea siderea. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
0TPM > 0
7Conditions
0.0Max TPM
0.0Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 0 0.00 0.00
holobiont · low.pH Control.temp 20 0 0.00 0.00
holobiont · control.pH_high.temp 20 0 0.00 0.00
holobiont · control.pH Control.temp 19 0 0.00 0.00
Whole organism 4 0 0.00 0.00
unannotated 1 0 0.00 0.00
live coral tissue/skeleton 1 0 0.00 0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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