Detailed information of FUN_049574-T1 in Siderastrea siderea

Genomic Location: contig_75:775094...807747
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0001618 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01764
all species →
Lipase_3Lipase (class 3)FamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR029058
all species →
Homologous_superfamilyAlpha/Beta hydrolase foldInterproscan
IPR002921
all species →
DomainFungal lipase-like domainInterproscan
IPR052214
all species →
FamilyDiacylglycerol Lipase-RelatedInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR45792
all species →
DIACYLGLYCEROL LIPASE HOMOLOG-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0006629
all species →
Biological Processlipid metabolic processInterproscan
GO:0016042
all species →
Biological Processlipid catabolic processInterproscan
GO:0016298
all species →
Molecular Functionlipase activityInterproscan
GO:0019369
all species →
Biological Processarachidonate metabolic processInterproscan
GO:0046340
all species →
Biological Processdiacylglycerol catabolic processInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K13806DAGL; sn1-specific diacylglycerol lipaseEC:3.1.1.116
Phototransduction - flyko04745deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_049574-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
12TPM > 0
7Conditions
27.8Max TPM
2.2Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 2 0.98 13.75
holobiont · low.pH Control.temp 20 2 2.02 27.80
holobiont · control.pH_high.temp 20 0 0.00 0.00
holobiont · control.pH Control.temp 19 2 1.13 13.12
Whole organism 4 4 21.09 23.80
unannotated 1 1 6.11 6.11
live coral tissue/skeleton 1 1 11.21 11.21

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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