Detailed information of FUN_049581-T1 in Siderastrea siderea

Genomic Location: contig_75:850646...852538
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF14875
all species →		PIP49_NN-term cysteine-rich ER, FAM69DomainInterproscan
PF12260
all species →		PIP49_CProtein-kinase domain of FAM69FamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR029244
all species →		DomainFAM69, N-terminalInterproscan
IPR022049
all species →		DomainFAM69, protein-kinase domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR21093
all species →		UNCHARACTERIZEDInterproscan

 Gene Ontology
No Gene Ontology signature was detected for FUN_049581-T1. This gene does have a gene model — the search simply returned no hit.
Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K25757DIPK2; divergent protein kinase domain 2-Signaling proteins-deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_049581-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
7TPM > 0
7Conditions
38.9Max TPM
1.2Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 0 0.00 0.00
holobiont · low.pH Control.temp 20 0 0.00 0.00
holobiont · control.pH_high.temp 20 0 0.00 0.00
holobiont · control.pH Control.temp 19 1 2.04 38.85
Whole organism 4 4 10.26 15.99
unannotated 1 1 7.49 7.49
live coral tissue/skeleton 1 1 10.72 10.72

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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