Gene detail

Detailed information of FUN_049628-T2 in Siderastrea siderea

Genomic Location: contig_75:1627732...1637499
NR annotation: no NCBI-NR hit recorded
Species abbreviation SSIDE · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

FUN_049628-T2

GGTTAAACGATATTTCACGAACTTCGTCATGTAATAAATTAGCAGTGCGCATGAGCAGCAAACTCCACGTGGCCGGCGTGACTGGAGGGAGAAGGTTGAAATTTGTAGCTAAAATGGTGTCTTTTATTTGTAATGCATGTGGACAAACTGTCAAGAAAGCTCAAGTAGAAAGACACTATCAAAACGACTGCCGTGATTGCGATGTTTTGTCGTGTATCGATTGTGGAAAAGACTTTCATGGCGATGAATATGTCGCCCACACTTCATGCATTACAGAGGCTGAGAAGTATCAAGGAAAACTTTATAAACCCAAAGACAAACAGAACAAAGGCGAGCACAAGCAGCAGGAATGGCTAAAGCAAGTGAGAGAAGCAACAAAGTCAGACACAGTCAATCCTCAGTTAGCTGTCCTTTTAGACAGAATCAGTGAATATTCTAATATACCAAGGAAGAAAGCCAAATTCCAAAATTTCTGCAAAAACAGTATCAATGTGCGAGATAGTGCAACTCTGGACAGACTCTGGGAAATTTTTTCAGGAAGTGAAAAGCAAAGCCCTCAACAAAGTGAAGTTAATGGCAGTGGTGTTCATGAAAATGGACAAAGTAATGGAACATCTGAAGATAAATTAACAGATGGAAATTCAGAGAAAACTGAGAATGAACAAAACAACAAGGAACTTGTGCAAAACtcaaaaaagaaggaaaacatAAACACTAGAGATTCtaaaaaaaaggacaagaaacagaaaaaaataaaagacagtGACATACAGGAAAAGGAACATAAATCAAAGGGAAAGAAAAGTAAAAAGGATATCAATGGAACTACAGAGGAGGTGGATGGActagaaaagaataaaaagcaacggaaaagaaagagaatggaagaggaagaagagagGGGTTTGTATTTGAGTTGACGATTTACTCTTTTATTATTCTACACAGCGTTATTTTGTGTGAATGTTTCAGTTGAAATCTGGTCTTACCGGTAGGTCATAAAGGTTCATGACCTTGGTTGATTTGGTGAAACCGTGATTGGGATTTTTCCGGGGATTTTCTTAATAAATATAGGGGCTTGTGTCTTGGGGAGAGGGGAAGGGGCTGAATGGGGTTCTCAAAACAAGAAAgtgtaaataaagaaagaatgaaataaagaACCTAGGAATCTCATTTAGTAATATTGATATTTAAGCTGTGTAGCCATACTACATGTACCTACTAGCTACACATTTAATGTAGGTTGAATACTGGTTAAACTAGAGACCAGATTTTACCTGCAATATGAATACATTTTCtattaaaaatttatttataaacaATAAGTGTTTTGATCTCACTGAGTTCAGTTTTTACTTGAAAGTAGTGAATAGTGCATTGATTTTATGTGTGTTATGTTAAAGGTGGGAATGTTCGAAAGGCAATAAAAAGTGATCAAAATATGCTACTGTTAAACATTAAAAGAATAAGAAtcacaaaaaaattttcttaaaattacaACTTGATTACAGTATTAATAAGACTATAAAGTGTTATTAATTAGAGTACTCCATGCAATTGTACAAATGTGTTAACTGCACAGGCCTAGTCAGATTgtttattaagtttattaatTTTAGTTTATGAATACATAGCACTAATACCAACATGTAACTGTAATGCAATGGTGCATTCCCCCCTTCAAGGAACATTTATCCCTGTAATGATGACTTAACTTAGGACACCTATGATCACCTCACAGAAGATGATTTCAAACAAGTTATTATGTCTGAACAGGGTGAATTGAGAGTTGCATTAAAATATCCTTGGGTGAAGGCAGTGAGTGCCttttaacccttgaagccctggTGTCATTataaaaattctccttactggtctctgTACATTTCATTGAgaactaattgggagaacttgtttaaacatcaagtaaattcatctttggtgattgTGTCacgtatgtgttataatgcactgacataaagaggagaaatttgatgctgatcactatttgggcttaaagggttaaagactgcaggcatacatgtacatgcaagTACATTTGTTAGTGTATTcccttacatgtacatgcaaatACATTTGTTAGTGTATTcccttacatgtacatgcaaatACATTTGTTAGTGTATTcccttacatgtacatgcaagTACATTTGTTAGTGTATTccctt

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08790 all species →	zf-LYAR	LYAR-type C2HC zinc finger	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036236 all species →	Homologous_superfamily	Zinc finger C2H2 superfamily	Interproscan
IPR039999 all species →	Family	Cell growth-regulating nucleolar protein	Interproscan
IPR014898 all species →	Domain	Zinc finger, C2H2, LYAR-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13100 all species →	CELL GROWTH-REGULATING NUCLEOLAR PROTEIN LYAR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000122 all species →	Biological Process	negative regulation of transcription by RNA polymerase II	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0005730 all species →	Cellular Component	nucleolus	Interproscan
GO:0006364 all species →	Biological Process	rRNA processing	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for FUN_049628-T2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.