Detailed information of FUN_049662-T1 in Siderastrea siderea

Genomic Location: contig_75:2082163...2084917
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF20209
all species →		DUF6570Domain of unknown function (DUF6570)DomainInterproscan
PF21107
all species →		STPRsSTPRs (score and three amino acid peptide repeats)RepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR046700
all species →		DomainDomain of unknown function DUF6570Interproscan
IPR048998
all species →		DomainSTPR domainInterproscan

 PANTHER
No PANTHER signature was detected for FUN_049662-T1. This gene does have a gene model — the search simply returned no hit.
 Gene Ontology
No Gene Ontology signature was detected for FUN_049662-T1. This gene does have a gene model — the search simply returned no hit.
Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for FUN_049662-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_049662-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
17TPM > 0
7Conditions
74.8Max TPM
2.2Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 7 6.94 74.76
holobiont · low.pH Control.temp 20 3 0.81 8.83
holobiont · control.pH_high.temp 20 2 0.23 2.45
holobiont · control.pH Control.temp 19 4 1.46 14.91
Whole organism 4 0 0.00 0.00
unannotated 1 0 0.00 0.00
live coral tissue/skeleton 1 1 0.03 0.03

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

TOP