Detailed information of FUN_049770-T1 in Siderastrea siderea

Genomic Location: contig_75:3351541...3382986
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
No Pfam domain signature was detected for FUN_049770-T1. This gene does have a gene model — the search simply returned no hit.
 InterPro
InterPro termTypeDescriptionSource
IPR052095
all species →		FamilyUNC-13 domain-containing proteinInterproscan
IPR014772
all species →		DomainMammalian uncoordinated homology 13, domain 2Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR45999
all species →		UNC-13-4A, ISOFORM BInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0099503
all species →		Cellular Componentsecretory vesicleInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for FUN_049770-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_049770-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
79TPM > 0
7Conditions
643.5Max TPM
312.0Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 20 344.26 522.65
holobiont · low.pH Control.temp 20 18 299.26 578.12
holobiont · control.pH_high.temp 20 18 323.50 620.06
holobiont · control.pH Control.temp 19 17 369.81 643.47
Whole organism 4 4 27.43 32.36
unannotated 1 1 21.67 21.67
live coral tissue/skeleton 1 1 23.92 23.92

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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