Detailed information of FUN_049886-T1 in Siderastrea siderea

Genomic Location: contig_76:644669...647098
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF20406
all species →		SAM_KSR1_NKinase suppressor RAS 1 N-terminal helical hairpinDomainInterproscan
PF13543
all species →		SAM_KSR1SAM like domain present in kinase suppressor RAS 1DomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR046933
all species →		Homologous_superfamilyKinase suppressor RAS 1, N-terminal helical hairpin superfamilyInterproscan
IPR013761
all species →		Homologous_superfamilySterile alpha motif/pointed domain superfamilyInterproscan
IPR046861
all species →		DomainKinase suppressor RAS 1, N-terminal helical hairpinInterproscan
IPR025561
all species →		DomainKinase suppressor of RAS, SAM-like domainInterproscan

 PANTHER
No PANTHER signature was detected for FUN_049886-T1. This gene does have a gene model — the search simply returned no hit.
 Gene Ontology
No Gene Ontology signature was detected for FUN_049886-T1. This gene does have a gene model — the search simply returned no hit.
Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for FUN_049886-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_049886-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
6TPM > 0
7Conditions
20.8Max TPM
0.9Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 0 0.00 0.00
holobiont · low.pH Control.temp 20 0 0.00 0.00
holobiont · control.pH_high.temp 20 0 0.00 0.00
holobiont · control.pH Control.temp 19 0 0.00 0.00
Whole organism 4 4 12.02 15.14
unannotated 1 1 7.05 7.05
live coral tissue/skeleton 1 1 20.82 20.82

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

TOP