Detailed information of FUN_049924-T3 in Siderastrea siderea

Genomic Location: contig_76:1123312...1131687
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00288
all species →		GHMP_kinases_NGHMP kinases N terminal domainFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR006205
all species →		FamilyMevalonate kinaseInterproscan
IPR006203
all species →		Conserved_siteGHMP kinase, ATP-binding, conserved siteInterproscan
IPR014721
all species →		Homologous_superfamilySmall ribosomal subunit protein uS5 domain 2-type fold, subgroupInterproscan
IPR020568
all species →		Homologous_superfamilyRibosomal protein uS5 domain 2-type superfamilyInterproscan
IPR036554
all species →		Homologous_superfamilyGHMP kinase, C-terminal domain superfamilyInterproscan
IPR006204
all species →		DomainGHMP kinase N-terminal domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR43290
all species →		MEVALONATE KINASEInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0004496
all species →		Molecular Functionmevalonate kinase activityInterproscan
GO:0005524
all species →		Molecular FunctionATP bindingInterproscan
GO:0005737
all species →		Cellular ComponentcytoplasmInterproscan
GO:0008299
all species →		Biological Processisoprenoid biosynthetic processInterproscan
GO:0005829
all species →		Cellular ComponentcytosolInterproscan
GO:0006695
all species →		Biological Processcholesterol biosynthetic processInterproscan
GO:0019287
all species →		Biological Processisopentenyl diphosphate biosynthetic process, mevalonate pathwayInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for FUN_049924-T3.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_049924-T3 across 85 RNA-seq samples of Siderastrea siderea. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
0TPM > 0
7Conditions
0.0Max TPM
0.0Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 0 0.00 0.00
holobiont · low.pH Control.temp 20 0 0.00 0.00
holobiont · control.pH_high.temp 20 0 0.00 0.00
holobiont · control.pH Control.temp 19 0 0.00 0.00
Whole organism 4 0 0.00 0.00
unannotated 1 0 0.00 0.00
live coral tissue/skeleton 1 0 0.00 0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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