Detailed information of FUN_050114-T1 in Siderastrea siderea

Genomic Location: contig_76:3132437...3137483
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF14517
all species →		TachylectinTachylectinRepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR036813
all species →		Homologous_superfamilyTachylectin 2 superfamilyInterproscan
IPR023294
all species →		DomainTachylectin 2Interproscan

 PANTHER
No PANTHER signature was detected for FUN_050114-T1. This gene does have a gene model — the search simply returned no hit.
 Gene Ontology
No Gene Ontology signature was detected for FUN_050114-T1. This gene does have a gene model — the search simply returned no hit.
Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for FUN_050114-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_050114-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
38TPM > 0
7Conditions
58.2Max TPM
3.5Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 9 3.55 16.96
holobiont · low.pH Control.temp 20 5 1.59 9.68
holobiont · control.pH_high.temp 20 8 4.93 58.23
holobiont · control.pH Control.temp 19 10 3.64 17.97
Whole organism 4 4 3.45 5.14
unannotated 1 1 8.92 8.92
live coral tissue/skeleton 1 1 2.58 2.58

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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