Detailed information of FUN_050823-T1 in Siderastrea siderea

Genomic Location: contig_79:777178...787058
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF03849
all species →		Tfb2Transcription factor Tfb2FamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR004598
all species →		FamilyTranscription factor TFIIH subunit p52/Tfb2Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR13152
all species →		TFIIH, POLYPEPTIDE 4Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000439
all species →		Cellular Componenttranscription factor TFIIH core complexInterproscan
GO:0001671
all species →		Molecular FunctionATPase activator activityInterproscan
GO:0006289
all species →		Biological Processnucleotide-excision repairInterproscan
GO:0003690
all species →		Molecular Functiondouble-stranded DNA bindingInterproscan
GO:0005675
all species →		Cellular Componenttranscription factor TFIIH holo complexInterproscan
GO:0070816
all species →		Biological Processobsolete phosphorylation of RNA polymerase II C-terminal domainInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for FUN_050823-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_050823-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
27TPM > 0
7Conditions
359.0Max TPM
35.0Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 5 63.00 353.26
holobiont · low.pH Control.temp 20 2 20.70 309.31
holobiont · control.pH_high.temp 20 7 33.03 358.96
holobiont · control.pH Control.temp 19 7 31.49 163.15
Whole organism 4 4 4.87 7.42
unannotated 1 1 9.66 9.66
live coral tissue/skeleton 1 1 11.97 11.97

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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