Gene detail

Detailed information of FUN_050825-T1 in Siderastrea siderea

Genomic Location: contig_79:831377...851690
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

FUN_050825-T1

ATGTTAGGCGACACAGGAATTGCCGTACATCCAGATGACGCCAGATACAAGCATCTTCATGGCAAGTTTGCTCTCCACCCATTCTGTAACCGGAAACTACCAATCATCTGTGATGATGTTGTCGATCCTGAGTTTGGAACAGGTGCTGTAAAGATAACGCCAGCGCATGATCACAACGATTGTGGAGTCGGCCAGCGACATGACCTGCCGTTTGTCACAATGATTGATGACAATGGAAACATCAAAGACGTTAAGGATTTTTATCCAGAGTTTCAGCATTTTGTCGGTTTAAAGAGATTTGATGCCAGGAAAGTCGTATCCGATGCTCTCACAAAGAAAGGCTTGTTtataaaaaaagaagacaatcAGATGGTAGTTCCTGTCTGCAGTCGGTCTAAAGACATTGTTGAACCTCTCATCAAGCCTCAGTGGTATGTTGACTGTAAAGAGATGGCGGAAATGGCTGTCAAGGCTGTTCGAGATGGAGATCTTAAGATCATTCCCAGCATGCATGAGAAGATCTGGTACAGCTGGCTTGAAAACTGTAGGGACTGGTGTATCTCCAGACAACTTTGGTGGGGTCATCGTATCCCAGCATTCTTTGTGACCATTGATGATCCCAACGTTCCTCCAGGAGAGGATACAGATGGCAAATACTGGGTCAGCGGTCGGACAGAAGAGGAAGTGCTAAAGAAAGCAGCGGAACGATTCAATGTTGAACCAGAGAAGATAACTTTAAAACAAGATGATGACGTGTTGGACACGTGGTTTTCCTCGGGCTTGTTCCCTTTCTCCATATTTGGTTGGCCAGAAGAGACTGAAGATTTTAAAGTTTTCTATCCTGGCACGCTATTGGAGACTGGACACGACATTCTGTTTTTCTGGGTTGCCCGGATGGTAAAGTTGGGCCTCAAGCTTATTGGTCAGCTGCCATTCACTGAAGTGTTTCTTCACGCTATGGTGCGAGATGCGCATGGCAGAAAAATGAGCAAGTCTCTAGGCAACGTTATCGACCCTGTTGACGTCATAAAGGGAGTTTCACTAGAAGATCTCCACAAACAGCTTGGGAACAGTAACCTGGATCCAAGAGAAATCGAACGCGCCAAAAAGGGACAGAAAGAAGATTATCCTGAAGGAATTCCCGAATGTGGCACTGATGCTTTGCGGTTTGCACTATGTGCCTACACCGCACAAGGTCGCGACATCAACCTTGACGTCCTTCGTGTACAAGGATATCGTCATTTCTGCAACAAGCTTTGGAATGCCACCAAGTTTGCACTTAGTGGTCTGGGATCTGACTTCTCCCCAAACGTTAAACCAGAGCTGATACGTAACGAGACTCTAGAAGACCGCTGGATTCTGAGCCGGTTGTCTGACGCTGTAAAAACAGCCAATGAAGGCTTCAGGAATTACGACTTCCCGACAGCCACTACGGCCATATACAACTTTTGGCTTTATGAGCTATGCGATGTTTATTTGGAGTATCTCAAACCAGTTCTACAAAACGGCGACAAAGAGACCATCAGTACAGCACGAAACACTCTCTACACGTGTTTGGAAAATGGTTTGATCTTGCTCAGTCCATTCATGCCTTTCGTCACAGAGGAGCTATATCAACGGTTACCGCGCAGGAGTGGGGACGCACCGCCAAGTGTTTGCGTCACACCTTACCCAGAGGAGTTTCCTTGGAGAGACGCAGTCCTTGAAGACGAGATGAGTCTGGTCCAGAGTATCGTGAAAACAATCCGTTCCATTCGTCAGGAATATAACTTGACCAAAGCCAAACCTGAAGtttaTGTGGTGTTCCATGAGCAATCTTTAGCGGCAGCTGTCAGCAAATACACAGACACAGCTTGTACTTTGAGTTCCAGCGAAAGAATTCATGTGATGTGTGAGGAGAAGCCTCCTCAGGGCTGTGCTGTGGCAACTGTCTCAGACAAATGCGAAGTACATGTGCTGCTCAAGGGCCTGGTGGACGTAGCTAAGGAAATTACCAAGTTGGATGGCAAGAAGGAGAAACTAAACAGTCAGCTTGCAAAACTAAAGGAAGCCATGGAAGTACCAGACTACGCTACAAAGGTACCAGAGAATGTTCAGCAGCAGAATACGGAAAAGCTTAAACAGTTGGAGACCGAACTCGGAAAGATCGAGCGGGCGCTAGCTTCATTTAAAATGGCAGAATAA

Transcript

FUN_050825-T1

TTTTCTGTACCTTTTGCATCTTTGCAGATGAGAAGTTGATAGTTGCTACTACTCGTGTGGAAACAATGTTAGGCGACACAGGAATTGCCGTACATCCAGATGACGCCAGATACAAGCATCTTCATGGCAAGTTTGCTCTCCACCCATTCTGTAACCGGAAACTACCAATCATCTGTGATGATGTTGTCGATCCTGAGTTTGGAACAGGTGCTGTAAAGATAACGCCAGCGCATGATCACAACGATTGTGGAGTCGGCCAGCGACATGACCTGCCGTTTGTCACAATGATTGATGACAATGGAAACATCAAAGACGTTAAGGATTTTTATCCAGAGTTTCAGCATTTTGTCGGTTTAAAGAGATTTGATGCCAGGAAAGTCGTATCCGATGCTCTCACAAAGAAAGGCTTGTTtataaaaaaagaagacaatcAGATGGTAGTTCCTGTCTGCAGTCGGTCTAAAGACATTGTTGAACCTCTCATCAAGCCTCAGTGGTATGTTGACTGTAAAGAGATGGCGGAAATGGCTGTCAAGGCTGTTCGAGATGGAGATCTTAAGATCATTCCCAGCATGCATGAGAAGATCTGGTACAGCTGGCTTGAAAACTGTAGGGACTGGTGTATCTCCAGACAACTTTGGTGGGGTCATCGTATCCCAGCATTCTTTGTGACCATTGATGATCCCAACGTTCCTCCAGGAGAGGATACAGATGGCAAATACTGGGTCAGCGGTCGGACAGAAGAGGAAGTGCTAAAGAAAGCAGCGGAACGATTCAATGTTGAACCAGAGAAGATAACTTTAAAACAAGATGATGACGTGTTGGACACGTGGTTTTCCTCGGGCTTGTTCCCTTTCTCCATATTTGGTTGGCCAGAAGAGACTGAAGATTTTAAAGTTTTCTATCCTGGCACGCTATTGGAGACTGGACACGACATTCTGTTTTTCTGGGTTGCCCGGATGGTAAAGTTGGGCCTCAAGCTTATTGGTCAGCTGCCATTCACTGAAGTGTTTCTTCACGCTATGGTGCGAGATGCGCATGGCAGAAAAATGAGCAAGTCTCTAGGCAACGTTATCGACCCTGTTGACGTCATAAAGGGAGTTTCACTAGAAGATCTCCACAAACAGCTTGGGAACAGTAACCTGGATCCAAGAGAAATCGAACGCGCCAAAAAGGGACAGAAAGAAGATTATCCTGAAGGAATTCCCGAATGTGGCACTGATGCTTTGCGGTTTGCACTATGTGCCTACACCGCACAAGGTCGCGACATCAACCTTGACGTCCTTCGTGTACAAGGATATCGTCATTTCTGCAACAAGCTTTGGAATGCCACCAAGTTTGCACTTAGTGGTCTGGGATCTGACTTCTCCCCAAACGTTAAACCAGAGCTGATACGTAACGAGACTCTAGAAGACCGCTGGATTCTGAGCCGGTTGTCTGACGCTGTAAAAACAGCCAATGAAGGCTTCAGGAATTACGACTTCCCGACAGCCACTACGGCCATATACAACTTTTGGCTTTATGAGCTATGCGATGTTTATTTGGAGTATCTCAAACCAGTTCTACAAAACGGCGACAAAGAGACCATCAGTACAGCACGAAACACTCTCTACACGTGTTTGGAAAATGGTTTGATCTTGCTCAGTCCATTCATGCCTTTCGTCACAGAGGAGCTATATCAACGGTTACCGCGCAGGAGTGGGGACGCACCGCCAAGTGTTTGCGTCACACCTTACCCAGAGGAGTTTCCTTGGAGAGACGCAGTCCTTGAAGACGAGATGAGTCTGGTCCAGAGTATCGTGAAAACAATCCGTTCCATTCGTCAGGAATATAACTTGACCAAAGCCAAACCTGAAGtttaTGTGGTGTTCCATGAGCAATCTTTAGCGGCAGCTGTCAGCAAATACACAGACACAGCTTGTACTTTGAGTTCCAGCGAAAGAATTCATGTGATGTGTGAGGAGAAGCCTCCTCAGGGCTGTGCTGTGGCAACTGTCTCAGACAAATGCGAAGTACATGTGCTGCTCAAGGGCCTGGTGGACGTAGCTAAGGAAATTACCAAGTTGGATGGCAAGAAGGAGAAACTAAACAGTCAGCTTGCAAAACTAAAGGAAGCCATGGAAGTACCAGACTACGCTACAAAGGTACCAGAGAATGTTCAGCAGCAGAATACGGAAAAGCTTAAACAGTTGGAGACCGAACTCGGAAAGATCGAGCGGGCGCTAGCTTCATTTAAAATGGCAGAATAATGGAATATAATGCAACTTACAGTCAATGAATGAAATTGTCGAATTTTTACTTTTAagaatttttggttttcaaatGCATCTCTCTCACCGTTAACTGTTCCCTGTGGTTTACACGTGGTTGACTTTTGACGTGGGATAGCTGTGAACCTGTATTTTCCTTATATGGAATAGCACACAGTTAACTGTACATCTCTCTCCTCCGGCGTcttcagagaaaaaaaaaagagaaaatcgGAAACGTGGAGAAAAACGGAaagaggggcgggggggggggaagagagAAATAGACGTAGCAGGGGAAAGAGCCCTAAGAATTAGCTGGTATTGCTGGTTtgcatgtgacgtcataaaattctaaaatcaaaactcgccaggcctgctgaatttttatcgtcaacagGTGTAAGATGACTTAAAAATGTATCGttttacaagtttccagctcggtagcgtccttCGTTTTTAAACTAGAGCAGTTTGAATTTTCGAGTTATCCGCCGTAcgtgacatcaagatggcgccgtgacaaaGCTGTCTTCTTTGAAAAAAAGGCCTCTCCTTAGGATATTTAgcagtttgaacatttcaagtattaggtGAGGTGTTTACGTGAAAGTACACTAGCTCATGAGCGAAAAGGAATCGCTTtcatagcaaaagtgaattCCAGGTGTTTGCTTTGATATCCGGCCGCGATATTGGTGTACCACGGCGGTAGaccaatatggcgtctgcatactgagctctataaatttccgTGGAACGTTTTGGCAAATAGCTCAAGAACGCTGTACCGCACAGAGCTGAGATTTGaagaagttgtttatttattaatctttgataacatttgaaattcttggcttcttttagtgaatggtttcgaatttatttttgtatggcgtgacagtgcaaCCCGGCAATATCCCAAGCTAAAatatttcttcatttatttaacGTTTCGCAGTTGAATATGTTATGCTGTAAGTAACCTTACGAGTCAACTGGCTCGTTCAATGGATATGCAAGAAAAATCCTTGCAAGTAAGAAATGTTCAATAAAAATAGTTGAAGCAATAGTTGCTCTGTTTCTTCAATACTAGATAAAATTTGAACCCCCAGTTTTGAATTTCTTTGTACAAGTGCGGTCCTGTGTGCGTGCTGTTGGGTTTAGCGGATGAACAAGCTTTTCTGgcaaaaaccttttttgttgAATAAAGGAAAGATAAAAGATGACAGTTGGACAATGGCCACCCCccttaaaattttatttgacAGCTCTTCAAAAGTATCCACTGTTAAGTGTGGGACCGCATCTTGCATTTGAAATTCGGTATGGAATTTTTCTGAATGTATTCccatttcggaaaaaaaatattgattCAAAAAATGGTATCCTGCTACTCGCAGGATGAAAAGCAAAAAAGTTAAGAACAGATCAAAAACGTTGTGATACAAAGGAAAAAGTCGCCTTAGCAGTACCTTCAGCTAGACTGGGGGCCTGGAGACAAGTCACGCACTATGGAAAGTGGGAAAGTTAATatgaccctgggaacgaggttggaaaGTTTAAAGGGAAAGTTACAAGACAACCTCGTCCCCtaggtcttctcgcttttcaatatggcggctcCAAGGCCATTTTGAAAGCCGAGAAGCCCCTGGGGACGAAGTGTCGTAAACTTCACAGTTTACATTATGCGAAAACTTGTGACGCGTGACGCTAGACATTCCAAAGCTATTACGTGTTAGACTGTATGACTATATTTGGATAGATTTTTTTCTAGTCACGTGCTCGATCGAGAGAAAAGGTATTACTAGGTTTTTGAATTCACTACTGTAACACGGCGTTTTACTCGCGTTGGTTGATTGGCACAAG

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08264 all species →	Anticodon_1	Anticodon-binding domain of tRNA ligase	Domain	Interproscan
PF13603 all species →	tRNA-synt_1_2	Leucyl-tRNA synthetase, editing domain	Domain	Interproscan
PF00133 all species →	tRNA-synt_1	tRNA synthetases class I (I, L, M and V)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002303 all species →	Family	Valine-tRNA ligase	Interproscan
IPR033705 all species →	Domain	Valyl tRNA synthetase, anticodon-binding domain	Interproscan
IPR009080 all species →	Homologous_superfamily	Aminoacyl-tRNA synthetase, class Ia, anticodon-binding	Interproscan
IPR014729 all species →	Homologous_superfamily	Rossmann-like alpha/beta/alpha sandwich fold	Interproscan
IPR009008 all species →	Homologous_superfamily	Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain	Interproscan
IPR037118 all species →	Homologous_superfamily	Valyl-tRNA synthetase, tRNA-binding arm superfamily	Interproscan
IPR013155 all species →	Domain	Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding	Interproscan
IPR025709 all species →	Domain	Leucyl-tRNA synthetase, editing domain	Interproscan
IPR002300 all species →	Domain	Aminoacyl-tRNA synthetase, class Ia	Interproscan
IPR010978 all species →	Homologous_superfamily	Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11946 all species →	VALYL-TRNA SYNTHETASES	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000166 all species →	Molecular Function	nucleotide binding	Interproscan
GO:0004832 all species →	Molecular Function	valine-tRNA ligase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0006438 all species →	Biological Process	valyl-tRNA aminoacylation	Interproscan
GO:0004812 all species →	Molecular Function	aminoacyl-tRNA ligase activity	Interproscan
GO:0006418 all species →	Biological Process	tRNA aminoacylation for protein translation	Interproscan
GO:0002161 all species →	Molecular Function	aminoacyl-tRNA editing activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01873	VARS, valS; valyl-tRNA synthetase	EC:6.1.1.9	Transfer RNA biogenesis	ko03016	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.