Detailed information of FUN_051135-T1 in Siderastrea siderea

Genomic Location: contig_80:1176443...1208229
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF07842
all species →
GCFCGC-rich sequence DNA-binding factor-like proteinFamilyInterproscan
PF01585
all species →
G-patchG-patch domainFamilyInterproscan
PF12457
all species →
TIP_NTuftelin interacting protein N terminal FamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR022783
all species →
DomainGCF, C-terminalInterproscan
IPR045211
all species →
FamilyTFP11/STIP/Ntr1Interproscan
IPR024933
all species →
FamilySeptin and tuftelin interacting proteinInterproscan
IPR000467
all species →
DomainG-patch domainInterproscan
IPR022159
all species →
DomainTuftelin interacting protein, N-terminal domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR23329
all species →
TUFTELIN-INTERACTING PROTEIN 11-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000390
all species →
Biological Processspliceosomal complex disassemblyInterproscan
GO:0071008
all species →
Cellular ComponentU2-type post-mRNA release spliceosomal complexInterproscan
GO:0003676
all species →
Molecular Functionnucleic acid bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K13103TFIP11; tuftelin-interacting protein 11-Spliceosomeko03041deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_051135-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
33TPM > 0
7Conditions
123.2Max TPM
17.1Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 6 12.86 69.75
holobiont · low.pH Control.temp 20 6 10.67 57.22
holobiont · control.pH_high.temp 20 8 23.58 92.31
holobiont · control.pH Control.temp 19 7 19.17 123.23
Whole organism 4 4 27.88 45.11
unannotated 1 1 15.70 15.70
live coral tissue/skeleton 1 1 19.42 19.42

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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