Detailed information of FUN_051141-T1 in Siderastrea siderea

Genomic Location: contig_80:1286631...1287314
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
No Pfam domain signature was detected for FUN_051141-T1. This gene does have a gene model — the search simply returned no hit.
 InterPro
InterPro termTypeDescriptionSource
IPR036236
all species →		Homologous_superfamilyZinc finger C2H2 superfamilyInterproscan
IPR013087
all species →		DomainZinc finger C2H2-typeInterproscan
IPR051580
all species →		FamilyZinc finger and chromatin remodeling-associated proteinInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR23057
all species →		JUXTAPOSED WITH ANOTHER ZINC FINGER PROTEIN 1Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005634
all species →		Cellular ComponentnucleusInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K19495JAZF1; juxtaposed with another zinc finger protein 1-Transcription-deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_051141-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
37TPM > 0
7Conditions
1,002.4Max TPM
47.2Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 3 4.63 53.78
holobiont · low.pH Control.temp 20 13 79.55 419.12
holobiont · control.pH_high.temp 20 9 87.08 1,002.38
holobiont · control.pH Control.temp 19 6 7.12 50.05
Whole organism 4 4 51.83 67.90
unannotated 1 1 58.98 58.98
live coral tissue/skeleton 1 1 184.30 184.30

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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