Detailed information of FUN_051219-T1 in Siderastrea siderea

Genomic Location: contig_80:2496946...2570882
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF02260
all species →
FATCFATC domainFamilyInterproscan
PF02259
all species →
FATFAT domainRepeatInterproscan
PF00454
all species →
PI3_PI4_kinasePhosphatidylinositol 3- and 4-kinaseFamilyInterproscan
PF20175
all species →
Tra1_centralTra1 HEAT repeat central regionRepeatInterproscan
PF20206
all species →
Tra1_ringTra1 HEAT repeat ring regionRepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR003152
all species →
DomainFATC domainInterproscan
IPR000403
all species →
DomainPhosphatidylinositol 3-/4-kinase, catalytic domainInterproscan
IPR016024
all species →
Homologous_superfamilyArmadillo-type foldInterproscan
IPR050517
all species →
FamilyDNA Damage Response and Repair KinaseInterproscan
IPR003151
all species →
DomainPIK-related kinase, FATInterproscan
IPR046807
all species →
RepeatTra1, HEAT repeat central regionInterproscan
IPR046805
all species →
RepeatTra1, HEAT repeat ring regionInterproscan
IPR011009
all species →
Homologous_superfamilyProtein kinase-like domain superfamilyInterproscan
IPR014009
all species →
DomainPIK-related kinaseInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11139
all species →
ATAXIA TELANGIECTASIA MUTATED ATM -RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005515
all species →
Molecular Functionprotein bindingInterproscan
GO:0000124
all species →
Cellular ComponentSAGA complexInterproscan
GO:0005634
all species →
Cellular ComponentnucleusInterproscan
GO:0006281
all species →
Biological ProcessDNA repairInterproscan
GO:0006355
all species →
Biological Processregulation of DNA-templated transcriptionInterproscan
GO:0035267
all species →
Cellular ComponentNuA4 histone acetyltransferase complexInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K08874TRRAP; transformation/transcription domain-associated protein-Chromosome and associated proteinsko03036deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_051219-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
65TPM > 0
7Conditions
109.7Max TPM
28.7Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 17 35.30 109.65
holobiont · low.pH Control.temp 20 12 23.07 78.44
holobiont · control.pH_high.temp 20 16 29.23 94.41
holobiont · control.pH Control.temp 19 14 30.91 103.88
Whole organism 4 4 19.94 23.96
unannotated 1 1 6.71 6.71
live coral tissue/skeleton 1 1 10.70 10.70

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

TOP