Gene detail

Detailed information of FUN_051621-T1 in Siderastrea siderea

Genomic Location: contig_82:54376...82203
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

FUN_051621-T1

ctgAACTACCCTTGTATTGATAAAATTTCTACTTTGTATCAATTTTTCTGTGTCCTTGGACTTAACACAATTTATAGAAAAAGATTTGACGCCCTTTGTTTCGGAAAACATTTAGATATAGGAAGGATGCCAAGAAGTTCGTTTCCCTTAAAGGATACTTTATGTAACTTTATTTGAATGACCACTACACTGGCTCATTGTCCTTGCGAAGACTGGGAACTAGAAACGAATGATACCATAAAAGGAAACGCAACCaatatttttcactattttcacCCCTCCCTCTTGCATCTGCTTGGTTCCTTGCAGCTTGATTACAAGAATTTTGAGTGGTTTTTGTTAGTCTTAGCAGTATTTAGGATGTCTGGCGACTTAAGTTCTCTCGTAGCTCGTCTAGAAGCTGTCACTAGTCGTTTAGAGACTGCTGCTGACAAAGCAAGTGGAGGACAAGCAGATGTTGGAATTTTGGTGGCAGGTTATGACGAGGTGTTAAAGGGCAAAGTGGCTGAATTTTATAAACTTTCAAGTAAAATTGGTGGAGATGTTGATACCCAGGTTAAGTTGGTCAAAAAAGCATTTGATGCTCAGCGAGAATTTATTGTCCTTGCTTCTAAGAGCCAGAAGCCAAATATGGATGAATTTGCAAAGCTGTTAAAGCCCCAGGCTGATGCTATCGCTGAAGTACAGGAATTCCGTGAGAAGAACCGTGGTAGTAAATTATTCAACAACCTGTCATCTGTCAGTGAGGCTATTCCTGCTCTAGGTTGGGTGTCAGTGAGTCCTACTCCTGCACCATATATCAAAGAGATGGTGGATGCCGCTCAGTTCTACATGAACAGGGTGTTGAAGGACTTCAAAGGAAAGGATGACACTCATGTGGAGTGGGTGAAATGTCTTAAAGATGCTCTTACTGACCTCCATGCTTATGTCAAGGCAAATCACACAACTGGCCTGGTTTGGAGCAAAACTGGAGCTGTAGCAAAGGCAGGTGCACCATCAGCAGCACCTCCTGCACCAAAGCCAGCCccaccaccccctcccccagtACAAGCACCCTCACCAATTACTTCAGGTCAAGACGCCCAACGGGGAGCTGCAACTGCATTATTCAGTGAGATCAATAAAGCAGGCACAAACATTGCTTCAGGATTACGAAAGGTTCAAGATGACCAAAAGACTCATAAGAACAAAGACCTGAGAAAAACTGGTCCAGTTCCAGATAGACCAAAACCTACCTCTGGGGGTGGCCCTAAGGTTGCTGCTGCTGCACCTGTCAAAAAGGCACCAGTTTTTGAACTGCAGGGCAAGAAATGGACTGTGGAATATCAAGAAGGCAACAAAAACCTTGTTATCTCTGAGCCACTACCATCGCAAACAGTATACATTTATAGCTGCAAGAACAGCACAATTCAAATCAAGGGAAAAGTCAATTCTGTGGTAGTAGATAACTGCAAGAAAACAGCAGTGGTTCTTGAAGGTGTCATTGGTACTGTTGAGTTTATCAATTGTCAGAGTGTGCAGTGCCAGATCAACGAGAATGTTCCAACAGTTTCAATTGATAAAACTGATGGCTGTCAAGTATTCTTTCCGAACGGTATTGGCTCAACTGAAATAGTTACAGCTAAGTCTTCAGAGATGAACATTATGATTCCCAAGCCTGGTACACAGGACTTGGCGGAGTTTTCCCTCCCCGAGCAATTCAAGAGCACATGGAATGGCAAGACGTTTGTGACCACATGCAGTGAATCTCTAGGATGAGAGGTGACTGCTCCTCCCGCCCAAACTTCGATTTGCCCGGCTTCATGCACAAAgtcaattttcaatgtgaactGTGTAGAATTAGCAAGCATATTAAATGACCATTTGACAAGAACCTCTCAAAGAAAGTCTAAAATTTCACTCACTGAAGTTAAGGTAACGTTGAACGACTGTGGGCGCTGGGAAACCACTGCTCGTTTACTTCTTTGATCATATGAGTAACTGTAAACCTTAGGATTGCACTTACTGAAGTCATTGAAGTAGCCTTAGCAGTTTGGGAATTTTAGTACTTGAAGTAAAATTTAACCTGGAATaggaaaatgattttttttcaacatgTTTTGTACTATTGAAAATTAGAGATCAAGAATTGTATTTTTCCTATTGCACAAAATTGTTCACATGAGAATACCTTAGCGTTgacaaagaaaataaagtttGCATTATCGAAAAAAAGTCTGTTCTCTTTCTCAATTGACAATTCTTTGCCACTTGATAATTTTTTATGGGGAATCCTCTCCTATATTTAAAATGTTGCTCCCTTTTTCACACCATTTGAATTTAGGGTCATTCGTTGTAATACCCATGCGTATTCTCAgtcaaattttcttacccacaGGCCGTGTTCTGTTTGATCAGCACCTAATAAAACTGTGACTTGCTGTTACTAGCAAGTACACGAGTTGAAAATCTTTTGTTTGCCGGAAGTACGCAGACAACGCACAACGCAGTAAATTGCGTAGCCTGTGGGGTCGGTGCACTTAATAAAGATAAAACTTTGAAATCTACCTGTTTGTATTAAAATGGCTTACAAAATCCTATTATTATCGCCAATCGTGGCTAAAACTCAGTAATCGTTTGCAGAAAACCTTGTGCGCTACACTGAGTCACGGACACTCTCCTCACCCCATGCAAAAAATTTATTCCAGTCATAACTGTCCGCATTTTAAGGGGAGGACGAGGGCTCAGAGTCCGGCATGATGTGTATGTAAAACCAATTGTGAAAACTAGTACATAGGCGTGTTAGGAATATGTGTGGTTTTGCAGAGCGTTGCAAATATGTAAGGCACACTTGTCTCGGGAGAGGTGTTCTAAAAGTATGTACGGGACGCTTTGCTGCTAGATTCAAAACCTTACCCCTTTTAGATACCAATTTTTATGGGAATACTACCTCTTCCATCTACCTAGAACAAAATTGTTCCTTTTTGTTCCTTTAAGGTGAGTCAAAAACAGGAGATCATCGTGCACGTTTCTAGTCGCTCAAAGCTTTCGTATATTTCGCGTTGTAATTTCTGCCAAAGTTTTTCAACTCTTTTTGGTAATTAGTTTTAGCTCCTTTCCCTTTCAGTTTAAGGCGTATTTTGGCGAACCttaaaaatactgaaataattACTTCCGGCTATCATTTCAATGTAGACCTACTCCACGATGGAAATGAT

Protein

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002507 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08603 all species →	CAP_C	Adenylate cyclase associated (CAP) C terminal	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR018106 all species →	Conserved_site	CAP, conserved site, N-terminal	Interproscan
IPR036222 all species →	Homologous_superfamily	Adenylate cyclase-associated CAP, N-terminal domain superfamily	Interproscan
IPR001837 all species →	Family	Adenylate cyclase-associated CAP	Interproscan
IPR016098 all species →	Homologous_superfamily	Cyclase-associated protein CAP/septum formation inhibitor MinC, C-terminal	Interproscan
IPR013912 all species →	Domain	Adenylate cyclase-associated CAP, C-terminal	Interproscan
IPR036223 all species →	Homologous_superfamily	Adenylate cyclase-associated CAP, C-terminal superfamily	Interproscan
IPR017901 all species →	Domain	C-CAP/cofactor C-like domain	Interproscan
IPR006599 all species →	Domain	CARP motif	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10652 all species →	ADENYLYL CYCLASE-ASSOCIATED PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000902 all species →	Biological Process	cell morphogenesis	Interproscan
GO:0003779 all species →	Molecular Function	actin binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0007010 all species →	Biological Process	cytoskeleton organization	Interproscan
GO:0007015 all species →	Biological Process	actin filament organization	Interproscan
GO:0008179 all species →	Molecular Function	adenylate cyclase binding	Interproscan
GO:0019933 all species →	Biological Process	cAMP-mediated signaling	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K17261	CAP1_2, SRV2; adenylyl cyclase-associated protein	-	Exosome	ko04147	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_051621-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples

57TPM > 0

7Conditions

681.3Max TPM

117.4Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
holobiont · low.pH_high.temp	20	17	128.17	485.23
holobiont · low.pH Control.temp	20	11	137.40	681.28
holobiont · control.pH_high.temp	20	12	89.08	319.61
holobiont · control.pH Control.temp	19	11	102.88	423.50
Whole organism	4	4	158.98	176.36
unannotated	1	1	145.78	145.78
live coral tissue/skeleton	1	1	146.04	146.04

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR22214402	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	485.23
SRR22214409	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	356.33
SRR22214421	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	247.01
SRR22214403	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	211.92
SRR22214416	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	190.73
SRR22214406	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	164.68
SRR22214404	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	148.50
SRR22214407	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	141.39
SRR22214412	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	121.47
SRR22214413	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	117.05
SRR22214405	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	115.89
SRR22214423	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	102.29
SRR22214415	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	44.94
SRR22214419	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	42.54
SRR22214420	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	35.57
SRR22214408	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	24.54
SRR22214418	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	13.24
SRR22214410	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	0.00
SRR22214414	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	0.00
SRR22214417	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	0.00
SRR22214424	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	681.28
SRR22214437	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	357.70
SRR22214443	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	352.62
SRR22214426	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	325.76
SRR22214441	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	216.07
SRR22214438	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	214.25
SRR22214425	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	154.53
SRR22214434	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	152.72
SRR22214430	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	151.91
SRR22214436	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	100.95
SRR22214429	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	40.15
SRR22214427	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	0.00
SRR22214428	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	0.00
SRR22214431	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	0.00
SRR22214432	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	0.00
SRR22214435	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	0.00
SRR22214439	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	0.00
SRR22214440	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	0.00
SRR22214442	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	0.00
SRR22214445	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	0.00
SRR22214448	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	319.61
SRR22214446	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	238.47
SRR22214465	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	219.72
SRR22214459	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	170.60
SRR22214463	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	144.11
SRR22214457	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	134.51
SRR22214456	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	109.50
SRR22214447	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	108.05
SRR22214458	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	103.62
SRR22214450	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	97.40
SRR22214460	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	82.15
SRR22214462	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	53.88
SRR22214449	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	0.00
SRR22214451	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	0.00
SRR22214452	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	0.00
SRR22214453	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	0.00
SRR22214454	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	0.00
SRR22214461	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	0.00
SRR22214464	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	0.00
SRR22214467	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	0.00
SRR22214470	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	423.50
SRR22214547	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	271.53
SRR22214468	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	262.72
SRR22214535	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	183.35
SRR22214506	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	183.26
SRR22214422	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	152.72
SRR22214471	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	115.65
SRR22214481	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	112.41
SRR22214469	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	93.51
SRR22214411	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	82.26
SRR22214400	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	73.72
SRR22214433	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	0.00
SRR22214444	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	0.00
SRR22214455	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	0.00
SRR22214466	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	0.00
SRR22214492	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	0.00
SRR22214524	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	0.00
SRR22214546	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	0.00
SRR22214548	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	0.00
SRR14295600	Whole organism	Whole organism	not recorded	not recorded	SRP315757	176.36
SRR14295603	Whole organism	Whole organism	not recorded	not recorded	SRP315757	175.83
SRR14295604	Whole organism	Whole organism	not recorded	not recorded	SRP315757	169.48
SRR14295601	Whole organism	Whole organism	not recorded	not recorded	SRP315757	114.27
ERR12861049	unannotated	not recorded	not recorded	not recorded	ERP159209	145.78
SRR12454619	live coral tissue/skeleton	live coral tissue/skeleton	not recorded	not recorded	SRP277390	146.04

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.