Gene detail

Detailed information of FUN_051636-T1 in Siderastrea siderea

Genomic Location: contig_82:305686...362553
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

FUN_051636-T1

ATGGAAAGCGCTGCTTCTTGTGAAGTAGTAGCTGCTCAAGTGCCATTTTATGATGCGTGTTGTTTACTGGAAAAAATAGCAGATACCTCGGGAActgagaagaaaaagaagatttTGTCAACCTTTGTAAGTTCATGGAGAGCTGCCCATCGAAAACTTCACAAGGATTCTTCGAAAACAACTGACTCATTCTACCCAGCCATGCGGCTCTTATTACCCCAACTGGACAAAGAAAGAGGTGCTTATGGAATAAAGGAGGttgttttggcaaaatactaCATGGAGATACTAAGCATAGGAAAGGACACTGCTGATGGACGAAAACTACTGAACTACAGAGCTCCTAAATATGCCAAACAGGATTCAGTGGCAGACTTTGCCAGTGttgcttattttgttttgaaaaacagGTGTCCAGAAAGAGGAAGtttgaaaattGATCAAGTTAACAAACATCTTGATCAGGTGGCACAAGGAAATGTTGAACACAAACGAGAGGACGTCAAAAAAGCCCTTCAACTACTTCTTAGGAACACAAGTGCGCTTGAACAGAAGTGGTTAATCAGGATCATTTTTAAGGAACTAAAGATTGGACTCAGTGAGAACTCTGTGTTCAATGTTTACCATCCTGATGCTGTGGAGCTTTTCAGTGTTTGTAACAGTTTGCCAAAGGTATGCATTGATCTTCATGACCCCACTGTTAGGATGAATGAAGCACAGATGTCTTTGTTCTCACCATTCAGACCCATGTTAGCTGAACGTGGAGCTCTTGAAGAGGTTGAAAAGCTGATGAGCAACCAACCCTTTTTCATTGAGACAAAAATAGATGGAGAGAGAATGCAACTCCACAAACAGGGAGATGACTTCATGTATTTTTCTAGAAGcGCTAATGACTACACTCATGTATTTGGCTCTCAATCGTCAACTGGAGTTCTCACACCTCACATTGCTGGCTGTTTCTCAAGTTCAGTGCATTCCTGTTTGTTGGATGGAGAAATGATTGTACTTGATCCTGCAACAGATGTCTGGCTatcCAAAGGGATGAATGTTGATGTCAAATCCTTAACTACTTATGAAAATGGCTACCATCCTTGTTTCATTGCATTTGATGTACTAGTTGTTAATgagaaaaaacttgccaatgtTCCCCTGAGTGAGAGGATCAAAACCATGGAAAAAATTCTAAATCCAAAGCCTGGCTATCTTGAGTTTGTTGAAAGGAAGGATGCTTCAACGAGAGGGGATGTAGTAAAAGCTCTTAATGAAGCAATTGACAGAAGAGAAGAGGGCTTGGTTATTAAAACACCATCTTCAATTTATAAGCCAAACTCGAGAAATGGAAGTGGCTGGGTAAAAATCAAACCGGAATATGTGGACAGTTTAAGTGACGAGATGGATCTTCTGATTGTTGGCGGCTATTTTGGAGTTGGTCGGAGAAGTGGGATGATATCTCATTTTATGTGTGCCGTGGCTGTGCCAGCAGATACTCCAGGGGACCATCCTAAGCTGTTTCACTCATTTTGTAAGGTGGGTTCTGGTTACACAATGAATGAGTTACATGAACTAGACCAGCTGTTGCGGCCTCACTGGAAGCCATTTGATACTAAAAACCCTCCTCAATCAGTTATTCTGGCTCCTGGATACAAAGAAAAGCCAGATGTGTGGATCGAGCCGTCCAGATCAAAAATAGTTCAGATCAAAGCCACAGAAATCATTTCTTCTGATAAGTTTAAAACTGGTTTAACTCTTCGGTTTCCAAGAGTTGAGGCAATTCGGAGTGATAAGATGTGGTACGAGTGTTTGAATCTAACTGAGCTTGCCAAGCTGAGAACGATGGCAGAAGGCAAACTCACATATCAACACACTAATGCAGAGCAGTCATCTGAACCCGCCAAAAAGAGGCGACGAGAAGTTGTCAGAGTTGAACACGTGTCTACTGTAGCAGAGCATTTCAAACCAGCTGACTTATCATCTGTCAAACAGGTGTCACAAATATTTCACGACAAGGAATTTTGTATTGTCAATGGTCCTGTATCTCATTCCAAGTCCTTGTTGGAGAAAAAAGTTGCCGAGAATGGAGGAACAATAACTCAGAACCCTGGGTCAGAAACATTCTGCGTCATTGCTGAAAGAATCAACTTGAGAGTTAAGAACATTATTGGTCAGAAACAATATGATGTTGTTCAGGCATCCTGGCTTATAAACTGCTTGGAACTCGGACAGTTGAGTCCATGGCTGCCGAGTGACATGTTGCATTGTTCACCGCGGACTGCTGAGAAATTCGCGGAGGAATATGATCGCTACGGTGACAGCTACACTGAGGACGCTACCGCTGATTCACTCAAAGAAGTTTTTAACAGTGTACAAGTCCAGaattctgcagtttctctttcaaaagaagaaatgttaCAAATAATGGAACGCTATTTTCCAAATAATTGGCCGCTCGGACTGTTCAAACATTGCAGGATATACCTTGATCGATACACTTGCATTGGGGACACATCAACGGGGATACCTAACTGCAGTCTGGAGCTTACTGGTTTAAAACTTCGGTTGTATGGTGCTCAGGTCACAGACACTTTTGACAGCAAAGTGACACATGTCATTTGCGATGAAAGAGACCTAAATCGTCTTGGAGAACTTCAAAGAATGCAGACCGCAGGTCCGAAGCAGCATTTTGTTAATCAGGACTGGGTGAATCAGTCAGTGGAAGCGGGAAAGCTCTTAACAGAAAGACATTTCAGGCCGATTgcttga

Transcript

FUN_051636-T1

gcggcttgaGATTGCGGCTGGCGGGAAGCTAAAAGTGAAAAGACCAGCATAATGGAAAGCGCTGCTTCTTGTGAAGTAGTAGCTGCTCAAGTGCCATTTTATGATGCGTGTTGTTTACTGGAAAAAATAGCAGATACCTCGGGAActgagaagaaaaagaagatttTGTCAACCTTTGTAAGTTCATGGAGAGCTGCCCATCGAAAACTTCACAAGGATTCTTCGAAAACAACTGACTCATTCTACCCAGCCATGCGGCTCTTATTACCCCAACTGGACAAAGAAAGAGGTGCTTATGGAATAAAGGAGGttgttttggcaaaatactaCATGGAGATACTAAGCATAGGAAAGGACACTGCTGATGGACGAAAACTACTGAACTACAGAGCTCCTAAATATGCCAAACAGGATTCAGTGGCAGACTTTGCCAGTGttgcttattttgttttgaaaaacagGTGTCCAGAAAGAGGAAGtttgaaaattGATCAAGTTAACAAACATCTTGATCAGGTGGCACAAGGAAATGTTGAACACAAACGAGAGGACGTCAAAAAAGCCCTTCAACTACTTCTTAGGAACACAAGTGCGCTTGAACAGAAGTGGTTAATCAGGATCATTTTTAAGGAACTAAAGATTGGACTCAGTGAGAACTCTGTGTTCAATGTTTACCATCCTGATGCTGTGGAGCTTTTCAGTGTTTGTAACAGTTTGCCAAAGGTATGCATTGATCTTCATGACCCCACTGTTAGGATGAATGAAGCACAGATGTCTTTGTTCTCACCATTCAGACCCATGTTAGCTGAACGTGGAGCTCTTGAAGAGGTTGAAAAGCTGATGAGCAACCAACCCTTTTTCATTGAGACAAAAATAGATGGAGAGAGAATGCAACTCCACAAACAGGGAGATGACTTCATGTATTTTTCTAGAAGcGCTAATGACTACACTCATGTATTTGGCTCTCAATCGTCAACTGGAGTTCTCACACCTCACATTGCTGGCTGTTTCTCAAGTTCAGTGCATTCCTGTTTGTTGGATGGAGAAATGATTGTACTTGATCCTGCAACAGATGTCTGGCTatcCAAAGGGATGAATGTTGATGTCAAATCCTTAACTACTTATGAAAATGGCTACCATCCTTGTTTCATTGCATTTGATGTACTAGTTGTTAATgagaaaaaacttgccaatgtTCCCCTGAGTGAGAGGATCAAAACCATGGAAAAAATTCTAAATCCAAAGCCTGGCTATCTTGAGTTTGTTGAAAGGAAGGATGCTTCAACGAGAGGGGATGTAGTAAAAGCTCTTAATGAAGCAATTGACAGAAGAGAAGAGGGCTTGGTTATTAAAACACCATCTTCAATTTATAAGCCAAACTCGAGAAATGGAAGTGGCTGGGTAAAAATCAAACCGGAATATGTGGACAGTTTAAGTGACGAGATGGATCTTCTGATTGTTGGCGGCTATTTTGGAGTTGGTCGGAGAAGTGGGATGATATCTCATTTTATGTGTGCCGTGGCTGTGCCAGCAGATACTCCAGGGGACCATCCTAAGCTGTTTCACTCATTTTGTAAGGTGGGTTCTGGTTACACAATGAATGAGTTACATGAACTAGACCAGCTGTTGCGGCCTCACTGGAAGCCATTTGATACTAAAAACCCTCCTCAATCAGTTATTCTGGCTCCTGGATACAAAGAAAAGCCAGATGTGTGGATCGAGCCGTCCAGATCAAAAATAGTTCAGATCAAAGCCACAGAAATCATTTCTTCTGATAAGTTTAAAACTGGTTTAACTCTTCGGTTTCCAAGAGTTGAGGCAATTCGGAGTGATAAGATGTGGTACGAGTGTTTGAATCTAACTGAGCTTGCCAAGCTGAGAACGATGGCAGAAGGCAAACTCACATATCAACACACTAATGCAGAGCAGTCATCTGAACCCGCCAAAAAGAGGCGACGAGAAGTTGTCAGAGTTGAACACGTGTCTACTGTAGCAGAGCATTTCAAACCAGCTGACTTATCATCTGTCAAACAGGTGTCACAAATATTTCACGACAAGGAATTTTGTATTGTCAATGGTCCTGTATCTCATTCCAAGTCCTTGTTGGAGAAAAAAGTTGCCGAGAATGGAGGAACAATAACTCAGAACCCTGGGTCAGAAACATTCTGCGTCATTGCTGAAAGAATCAACTTGAGAGTTAAGAACATTATTGGTCAGAAACAATATGATGTTGTTCAGGCATCCTGGCTTATAAACTGCTTGGAACTCGGACAGTTGAGTCCATGGCTGCCGAGTGACATGTTGCATTGTTCACCGCGGACTGCTGAGAAATTCGCGGAGGAATATGATCGCTACGGTGACAGCTACACTGAGGACGCTACCGCTGATTCACTCAAAGAAGTTTTTAACAGTGTACAAGTCCAGaattctgcagtttctctttcaaaagaagaaatgttaCAAATAATGGAACGCTATTTTCCAAATAATTGGCCGCTCGGACTGTTCAAACATTGCAGGATATACCTTGATCGATACACTTGCATTGGGGACACATCAACGGGGATACCTAACTGCAGTCTGGAGCTTACTGGTTTAAAACTTCGGTTGTATGGTGCTCAGGTCACAGACACTTTTGACAGCAAAGTGACACATGTCATTTGCGATGAAAGAGACCTAAATCGTCTTGGAGAACTTCAAAGAATGCAGACCGCAGGTCCGAAGCAGCATTTTGTTAATCAGGACTGGGTGAATCAGTCAGTGGAAGCGGGAAAGCTCTTAACAGAAAGACATTTCAGGCCGATTgcttgattattattgatttttgttagagtggttttactctgttgtgattggccagaatGATAACGTTGGTTTTGCCACAAACAacacagtgaaccaatcagaactcgaagcaggTACCTATAActggcgccaagcgcgggaaaacgcgtgtgaCAAAGGCACGACCGCTTTTGGTTGTATAAGTGGGTACCGAAAACACACTACTTGGGGTAGCCCCACAGTGGACTAATATCCCATCCAGAAGGGAGTTGTAATGCTTCTAGTTGCGTCTTGCTCCGTATTGCTGAACCACGTGCCTTGTTCAAACAGTTTCACTCGGACTTTATCTGTGACAAGCACAATTCAGCCAAACAGTAATCTCACTGTTTAAGAGATCAAagacatatatatttttattatgCCTGTGACTTTTAATGATTATTTggtgaatgttttttttttgtatgatGTGAACCTCAGTAACCTCAGTTAAAGATTAATTGTACGAGTAGTGATGCAATTAACTGGTATTCAAGTGTATGCATATGATGCGGAACTGACATCCGGTAAGGAAACAAACAGCTGTTGTGGGGAGGTAGTCGGAGTAGTGAATGGTTCTTCCCTCAAATAAGATGAGTATTTATAGGCCAAACAACTTACAAATACTAATCAATATTGAACCTGCTTTCCACGAACGCCGCGGCCTTAGCCCGGGCTTCAGCTACAAGAATACGCTTTCGAAATTAGCCGGAAGTACAGTCATgaatgactcctctgcgccctgtatCCGCTTGCATGAGTAGAGAGAGTTCCTTTGCCGAATCACGGAGTACGTATGAAGTTATGTGGTTTCGGTTCACAAATTTGGATCTGAAGTACTCAAGTAAGGGGAAGAACTTTTTGAAGGCGTTATCATGTTCTTTGTTTTACAAACGATTTGAAGCATAGGAATTTATGTAGGACACAAACTGTACGGAAACCGGGCCTGTGCGGTTTTACAAACGTGAtgagcaaaaaaaataaaaataaaaagtaacaGAGTCACGTTAAAATTCTTATGTCCTCTTCTTATGCGGTTGTTTCCTTTCCAAAACGCATTTTTTTCCAAGATGAAGCCGAATACAAATGGAACTCCTGTCTCTTGTGAAGCGCCAACGAAAGGAACCTCCCTCGGCACTGACAGCTTATGACTCTTTGACGTCAATTTTAGTAACACTCTCTTGGCCTCCAACACACACGGAAAATAATACTTTAATGTATTCTCCATAATTTTCCAAAGTCGAATCTACTGTCACCTGGCAATTTCCCTAAAAACGCATGACCTATTCAACCTGTCGTAGGTAGACATCTCCTTCAAGGTGACGCGAGAGCCCATTTGAAGCAGTTAACAAGagttaagaggctgtctccctaatAAGAGCGGAATAGTCGATCTGGCttgaaaaatagatttcgcTCATTTCGTGTGTGTTGAAAGACTTTCATGTACCTATACCACAATCCGCTTGATCGggatcttttaaatttttggagtTTTAAGGGATTTTCGGTTCACCCGAGGGAACGCTTGTGACGGCCCTTATCTAGGCTGTAATTTTCCCAACCTTGAAGATCAATTGAACAAGAACTAACAAACCCgtacaaaacaaacaccacagcCAGTTATaatatctttttaatttttgaaggCGACTTTTGTGACCGTTGAGTTTGAAGCCAGCTAGCCGTGAGAGTTTAACGACATCCCCATTGCACAGCTTAATCCATCGCCGGGATGATTTGCGGATATCgcaaaaaattagtttttattttgtacTTGTTATTAAGATAGCGAGAGGAAATTGCCGTTCTTGTCTAGAAGATCTTGGATAAAGTGAATATCTTTATCAAACCATGCAAGCTTTCCAAAAGATAGATTTTCTTTCAATGGTTATGTCCTTATTGTTCCACAGAATAAAGATTTTTTAGGTACGTATCCTCGAAATTGTTTCGCAGATCAGCGAAATAGTCTAGCAGCTCACTACAGAAAACGGGTAATTCTTCCCTAGGTTTAACCGCGTTATAGTTACATTTTAGAATGAAAGGAAACCCACCAAATTTGTTTAAGTATGAGTTTGGAATTGCTTTCCAAGATTCATCTGAACCGAGTAAAATCTAATGATCCAACTTAATCGTAACGCTTTTAACATTGTACCAAAGCATGGAAACTTTAAGCGCCCTTTTGACAGTGGTAGATAGAGCATGTCTCTTTTGATcttatcctttttgtttttccacaaaaacGCGAAAAGTTTACTTTGAACTGCCGAATAATTGACTCCGGAACAGAGAGCACTGACGCAGAGTAAATCAGTTGAGATATTCCTAGCGATAATTTAACTATTATAGATTATACAATTATATATTTTGTCATTGTAAATACTTTATTGTAATCGTACTAGCTGTTTTGAAACTACGCATTTCAGCCCTTTGACTGCATATGTATTTTCAAGTAAACTAACTTTCTATCAGACCCCCGAGATACCCAGGTGTTAAGTTTGTTTTGCATTCTCTGGATCTTGAGActtaagttgttgttgttgtgttttcgGGGTCATaggaaagaaatttaaacgcCTCGCGTGCACATTTGAAATTTAAGAGTTTTTTAtggtttattttctttgttggaGCCAATCCACAAAGCTTGAAACGTCAATCTCAAATACTCATGAACTCGTGAATGAAATTACGACGTAAATCTTCATTCGGTGATCAAAGACGTTTTTCACCAAGCAATGGCTTAGTTCAGAAACTAAAGCCTCTCTTTTATATAGTTTGATCGCGTTTACCCTATAAACTGTAGTAGACCGTggtactattttttttttaatatattgtGTTTTTACGTAGGGAATTCCCAGTCGTAAGCTATACGtagtctttcttttctttttttctttttttttttttttgattcgTTAAAAAAAGACAGTTACAATAAGAAAGGAAACAAACGCATAAACacgaaagaaaagcaaaaaacgCAGTATACTAGGGCCAGGATTTCTCACTGGGGGTTGGGGAGGGGGACGAAGAGTCACTAATAAATATGTGCCATATCTGGCTGTGCAATAAGCACTGTGTCAATTTGAAAGCCTATTATTTTGTACGGCAACGAATCACTGAGCTTACAAATCCAAAAAAGCGTGACTGGGTTTTCACGAGACAGC

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16589 all species →	BRCT_2	BRCT domain, a BRCA1 C-terminus domain	Family	Interproscan
PF04679 all species →	DNA_ligase_A_C	ATP dependent DNA ligase C terminal region	Family	Interproscan
PF11411 all species →	DNA_ligase_IV	DNA ligase IV	Family	Interproscan
PF04675 all species →	DNA_ligase_A_N	DNA ligase N terminus	Family	Interproscan
PF01068 all species →	DNA_ligase_A_M	ATP dependent DNA ligase domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012340 all species →	Homologous_superfamily	Nucleic acid-binding, OB-fold	Interproscan
IPR036420 all species →	Homologous_superfamily	BRCT domain superfamily	Interproscan
IPR001357 all species →	Domain	BRCT domain	Interproscan
IPR029710 all species →	Family	DNA ligase 4	Interproscan
IPR000977 all species →	Family	DNA ligase, ATP-dependent	Interproscan
IPR036599 all species →	Homologous_superfamily	DNA ligase, ATP-dependent, N-terminal domain superfamily	Interproscan
IPR044125 all species →	Domain	DNA Ligase 4, adenylation domain	Interproscan
IPR012309 all species →	Domain	DNA ligase, ATP-dependent, C-terminal	Interproscan
IPR021536 all species →	Domain	DNA ligase IV domain	Interproscan
IPR012308 all species →	Domain	DNA ligase, ATP-dependent, N-terminal	Interproscan
IPR012310 all species →	Domain	DNA ligase, ATP-dependent, central	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45997 all species →	DNA LIGASE 4	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0003910 all species →	Molecular Function	DNA ligase (ATP) activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0005958 all species →	Cellular Component	DNA-dependent protein kinase-DNA ligase 4 complex	Interproscan
GO:0006281 all species →	Biological Process	DNA repair	Interproscan
GO:0006297 all species →	Biological Process	nucleotide-excision repair, DNA gap filling	Interproscan
GO:0006303 all species →	Biological Process	double-strand break repair via nonhomologous end joining	Interproscan
GO:0032807 all species →	Cellular Component	DNA ligase IV complex	Interproscan
GO:0051103 all species →	Biological Process	DNA ligation involved in DNA repair	Interproscan
GO:0071897 all species →	Biological Process	DNA biosynthetic process	Interproscan
GO:0006310 all species →	Biological Process	DNA recombination	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10777	LIG4, DNL4; DNA ligase 4	EC:6.5.1.1	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_051636-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples

44TPM > 0

7Conditions

190.9Max TPM

40.4Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
holobiont · low.pH_high.temp	20	12	52.36	160.91
holobiont · low.pH Control.temp	20	10	41.45	165.26
holobiont · control.pH_high.temp	20	9	46.23	190.86
holobiont · control.pH Control.temp	19	7	28.38	116.26
Whole organism	4	4	14.26	18.91
unannotated	1	1	15.31	15.31
live coral tissue/skeleton	1	1	19.23	19.23

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR22214405	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	160.91
SRR22214404	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	141.02
SRR22214417	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	114.11
SRR22214410	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	101.29
SRR22214423	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	94.30
SRR22214421	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	81.75
SRR22214408	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	80.24
SRR22214409	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	75.48
SRR22214406	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	67.07
SRR22214419	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	49.17
SRR22214415	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	44.34
SRR22214413	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	37.60
SRR22214402	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	0.00
SRR22214403	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	0.00
SRR22214407	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	0.00
SRR22214412	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	0.00
SRR22214414	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	0.00
SRR22214416	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	0.00
SRR22214418	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	0.00
SRR22214420	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	0.00
SRR22214428	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	165.26
SRR22214427	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	99.08
SRR22214438	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	95.04
SRR22214441	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	80.11
SRR22214436	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	72.19
SRR22214439	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	71.63
SRR22214445	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	71.29
SRR22214443	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	67.56
SRR22214431	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	58.66
SRR22214437	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	48.11
SRR22214424	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	0.00
SRR22214425	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	0.00
SRR22214426	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	0.00
SRR22214429	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	0.00
SRR22214430	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	0.00
SRR22214432	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	0.00
SRR22214434	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	0.00
SRR22214435	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	0.00
SRR22214440	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	0.00
SRR22214442	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	0.00
SRR22214463	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	190.86
SRR22214461	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	149.04
SRR22214460	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	135.36
SRR22214454	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	100.66
SRR22214450	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	95.59
SRR22214459	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	91.26
SRR22214465	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	66.62
SRR22214453	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	64.73
SRR22214467	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	30.50
SRR22214446	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	0.00
SRR22214447	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	0.00
SRR22214448	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	0.00
SRR22214449	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	0.00
SRR22214451	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	0.00
SRR22214452	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	0.00
SRR22214456	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	0.00
SRR22214457	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	0.00
SRR22214458	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	0.00
SRR22214462	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	0.00
SRR22214464	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	0.00
SRR22214547	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	116.26
SRR22214471	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	108.86
SRR22214506	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	82.47
SRR22214411	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	74.66
SRR22214548	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	58.07
SRR22214470	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	50.00
SRR22214535	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	48.89
SRR22214400	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	0.00
SRR22214422	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	0.00
SRR22214433	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	0.00
SRR22214444	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	0.00
SRR22214455	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	0.00
SRR22214466	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	0.00
SRR22214468	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	0.00
SRR22214469	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	0.00
SRR22214481	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	0.00
SRR22214492	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	0.00
SRR22214524	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	0.00
SRR22214546	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	0.00
SRR14295601	Whole organism	Whole organism	not recorded	not recorded	SRP315757	18.91
SRR14295600	Whole organism	Whole organism	not recorded	not recorded	SRP315757	16.40
SRR14295604	Whole organism	Whole organism	not recorded	not recorded	SRP315757	12.93
SRR14295603	Whole organism	Whole organism	not recorded	not recorded	SRP315757	8.78
ERR12861049	unannotated	not recorded	not recorded	not recorded	ERP159209	15.31
SRR12454619	live coral tissue/skeleton	live coral tissue/skeleton	not recorded	not recorded	SRP277390	19.23

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.