Detailed information of FUN_051647-T1 in Siderastrea siderea

Genomic Location: contig_82:473627...551818
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF04182
all species →		B-block_TFIIICB-block binding subunit of TFIIICFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR007309
all species →		DomainB-block binding subunit of TFIIICInterproscan
IPR044210
all species →		FamilyTranscription facto Tfc3-likeInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR15180
all species →		GENERAL TRANSCRIPTION FACTOR 3C POLYPEPTIDE 1Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000127
all species →		Cellular Componenttranscription factor TFIIIC complexInterproscan
GO:0003677
all species →		Molecular FunctionDNA bindingInterproscan
GO:0006384
all species →		Biological Processtranscription initiation at RNA polymerase III promoterInterproscan
GO:0042791
all species →		Biological Process5S class rRNA transcription by RNA polymerase IIIInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K15199GTF3C1; general transcription factor 3C polypeptide 1-Transcription machineryko03021deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_051647-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
17TPM > 0
7Conditions
22.4Max TPM
2.6Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 2 0.81 10.76
holobiont · low.pH Control.temp 20 2 0.98 13.65
holobiont · control.pH_high.temp 20 3 2.59 19.94
holobiont · control.pH Control.temp 19 4 1.86 14.71
Whole organism 4 4 14.25 16.44
unannotated 1 1 22.40 22.40
live coral tissue/skeleton 1 1 15.28 15.28

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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