Detailed information of FUN_051900-T1 in Siderastrea siderea

Genomic Location: contig_82:3491008...3503770
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF15745
all species →		AP1ARAP-1 complex-associated regulatory proteinFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR031483
all species →		FamilyAP-1 complex-associated regulatory proteinInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR34529
all species →		AP-1 COMPLEX-ASSOCIATED REGULATORY PROTEINInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0034315
all species →		Biological Processregulation of Arp2/3 complex-mediated actin nucleationInterproscan
GO:0035650
all species →		Molecular FunctionAP-1 adaptor complex bindingInterproscan
GO:0048203
all species →		Biological Processvesicle targeting, trans-Golgi to endosomeInterproscan
GO:1900025
all species →		Biological Processnegative regulation of substrate adhesion-dependent cell spreadingInterproscan
GO:2000146
all species →		Biological Processnegative regulation of cell motilityInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for FUN_051900-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_051900-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
6TPM > 0
7Conditions
72.0Max TPM
3.7Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 0 0.00 0.00
holobiont · low.pH Control.temp 20 0 0.00 0.00
holobiont · control.pH_high.temp 20 0 0.00 0.00
holobiont · control.pH Control.temp 19 0 0.00 0.00
Whole organism 4 4 59.32 72.04
unannotated 1 1 30.01 30.01
live coral tissue/skeleton 1 1 43.16 43.16

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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