Gene detail

Detailed information of FUN_051944-T2 in Siderastrea siderea

Genomic Location: contig_83:648026...681856
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

FUN_051944-T2

ATGTCAACTGATTTACTTTTACTTCATGACAGGGACCTTTTTGAGTGTTCCCCAGTTCTTCCTACACCAGCATATGGTGCTAAAGATAAAGCACACAAAATTGGATTGCAGATCTTTGAAGAATTGCCAGGAACATTCACAGGCAAAGCTAAGTTCTTTGCCCGACAGGATGGTAGTGAAGATGTGTTTGAGAAGGATGGTCGCACTGCTTTGTTCAGTGCATTGGTGCATAGCCGCACTGATGATATGCAAGTGAAATTTGAATTGCCTCAACTTCCAAGTGGTTCTAAGACCCTGCACTCTTTGGCTACTGAACAGAGAGAGAGTGCAGATGATGAAGGCTTTGAATCGCTGGAGACGAGCTCTAACTCATCAACAACGTCAGAGCAGGCCACACTTACACAGGAGAACACAGATATCTGGTCTGCTGCATTAGAACTACCTTCACAGAAATTTTATACATGGGAGATGGAGGGAAGACGAGAACTGTTTAACGAGAAGCCTTTTCTCTCAGAAGCAGGACCTGCTGTATTTGATGCGCTCTACAACACTGTGATTCGTCAAGTCTCATATATAGTGAGGTCTCCCAGTTTAAGCTGCAACATGGTTTCTTTGCATACCCTGATCAAGGATTCTATTAATGTGCTGATTGGTGTGCCCTCTGGAACATTTCATCTGGATAAGGTTGCCCAGTGTTTTAGAGTCACTGAACAGGTCCGTCTGTCTGGTACATCACCTGAGATGCTTGCTAGCATCTTGGCTCGAATGGCGGCCACGGGAACAGATTACATTCAGCTGAACAAGTTTGCAACTCATCAACGAGGACACACAGCTGGTCTTGTTCTACAAGCTTTCTTGGGGGCTTTGCAAAACTATTTACACTGCTACAGGGCTGCTGTCTTATCAGTGAATGTGTCTTCAGTGCAAAGCCCTCTCATGTTAACATTTGCCTTTGAGAATATAGCAAGACAGTTAAGGTTTCTGGCAAATGTGTGCATGTGTTCTCAGGCATTTAAAAAGGCTCCAGGTGATCCAAAAGTCAAGTTTCCTACAGGTGTTAAACTGTTGACTTACCTGTACCAACTGTGTCTGGAGCACTCAAGTTCCAATTTTTATCCCATCTTGTTGTCTCTTCTAAAACACAGTGTTCTGCCATACATCATGTTTGTCCAAACTTGGGTTTTCAAGGGTGTCTGTCATGACATGTTTGGCGAGTTTATGATTGAAATGGATGAGCAGTATTTAGCATACCGAGATAAGCACTTTTGGACACAGGGCTTTGTGATGGCTGGTCGTGACAAGCTTGATTGTGTGCCATTATTTCTGAGTGAACTGGCAGATGATATATTTGTTTGTGGTAAAACGATCAACTTACTGAAGCTATGCTGTCCAGAGcacTTTTTGTGTGATCCTGGTATTCCGCTGCCCAGGATGGAGGTGACATTTTCAATGCGGCGGCTGAATAAAATTGAAGAGGAATGCAAGCAGTACATGGCTGCAATACAAATAATGCATAGACAGCTACAAGAAAAGAGGAAGAATGAGAGGAAAGCTGTTGAGGACGAAAAGCAACGAACAATACTTGAAGAACGGGAAAGAACAGAAAAAGCTTTGTCAGAGATAACAGaCCTTATTCAGAAAGCTAAGAACGCAGTTGAGCTGAAGAAGCGTGAAGACCTCAACATGCTCAAGGAACAGATGGAAGAGGCATTTAAACATAAAGCTTTGgcaagaaaacaagaacaagaagatgATGCCAAATATCTTCAAGAAGCGGAACAGAGAGAAGCCACCACAGCTTCAGTAGAGGAGGAGTTGAAAAACAAAGCGAGGGAAGAGTTGATCAAGTACTACGAGGAACTTAGGCGTGAAATGGAATACAGAGAATTCCGTGCACAGTGGCGCATCCGTCGCAGGGAACTGGACTCTGCTAGAGCCCAGTTCCTGGCCCAGGAGCAATCCCGGTTAGACAGCTTGGAGGAACAAATGACACTTGCCTCTGGTGCCCAGACCCCTGCTAGAACACCAGATTTACCTGATGCGCAGCCAAGGAGAGAAGTTGAAGAAAAAACTTCAACTGTTTCTAAGGATGAAAGAGTATCTACTCCGGTTTCAGTTCCGAGTCCAAGTCTTGTGTCACTTATCGCCAGTGGTGTAAGGACGGATGCTTTATTGAGATCAGAGCAGCAAAAGAACTCTGCTGGTTTAGCAGATTCCATTGCTGTAACAGCAGATATTGTTGCATCTGAAGAAAGTGTCTCCAGCGAGAACGAAAGTGCAAGTGGTGAAAAGTTAAAAGTACAAACTACACAACTGAGCTCTGAAGCAGCTGCTTCAGACAACAGGGCGAGAAAAACTTGGGATAATCCTGAGGAGAGCGCTGCGCGGCTTGAAAAGGTTAAGGAAGAAGGTACTGGAAGAAAGACATGGGAAACGCCTGATGGTGAACTAAAGATCGCTTCTCCTCTCCCGAGATCACATCCTTCAGACTCTTCAGTACAGTTCGCCATTTACGGTGATAAACGAAAGAGTGTCGAGGAAAAGCAGACACCAGGTTCTGGCTTACATGACGATGCTTTTAAAACCAACATGCCTCACGTTTCTGATTCATCAATGCAAAACATTCTCTACCCCAGTACACCCTCGGTTCCGACATCAGGCCTGGATGCTCAGGCCTCTAGCTTTCAAACTCAGCCCTCTGATTCGGATTCTGGAGGCCTGGTTACTGGCCATCCTTCCGACTCCACGGCTCAAGACATTTTCTATGGTAGCAGCAGAACTCAAGTGTCTCCTGAAGCTTCCTCACAAGGGCACCCTTCCGACTCTTCAGTACAGGGTCTCATGTACATAAGCGGTGCCCAGGAAAGAGCCAGTTCTGAAAGTCGGCTTTCAGAACACGGCCACCCGAGTGACTCATCTGTCAGCACCCTCTTGTACCCCACAACTGTGAACACGCCTATCCCCCATAGCCCCCGTCTTTCCCCGCACGGTCATCCCTCTGATTCTCAAGTGTCTCTCTGTCAAGACAGCGGTAACGGTCTCAATACAGCGCAGATTTTGCGTCACAGCTCAAGGTCAACATGGCAGGATCCATCGGATGCCTCGGTGCAGAAACTTCTCGGGGACATGTCCATTTTGGGAGAGAGCCAACATACCACCCGTGGTACCCCTCCCCCAAGCGTGGTTCAAGATATTCTGTACCCTGGCCCTGACACACAGTCAGCATCTTCTGTCTGTCATTCCCGCGGCACCCAACCCCAAAGCGTAGCCCAGGACATTTTGTACCCAAGAGGAGATGAGTCGGGTCAACTGCTTTCAGCAGTTCACACTCGTGGGGCCCCTCCCCCGAGTGTTATTCAGGACATTATGTACCCAAGCGGGGAGGGAACAGGAAGAGAGGAGACGAGAGTGTCAACTCGGGGACAGGAACCTGAGGTGAAGATAACGAAGATTATGTATTACGTCAAAGACAGTGAAGGGACAAAAGAGGTAGAACCACAGTCCAAGCAGTTGGAGTTTGAGGATGTGTGGCTAGCGTCTCAGGTGGAACCGCTTCAGGACAACTTTGATTTATTGGACGAAATACCTTCGTCAAATTTACTTCAAGGTGCTTTGGGAACCTTTCCAGCGACACAAGGTTCCGATGACGGGGCTACTGACGCGGCGCAGCTgatgtcacttccggttttaCTTCAGAGATGTGTCATGGCGCCTGTTCTAGCACAGGTGTCCTTGGTAAATTCAGCAATCGTGGCGTACTTTATGGACGATCTTCACATCAACAAACACTTCAACTTGTTCAAGAAATTGCTGTTCATGGAGGATGGCGAGTTTTCACTCTCACTGTCAAGCCAGCTGTTTGAGAAGGTATTTGGTTACTTGCTTGACTTGTAA

Transcript

FUN_051944-T2

GTATGCCacgataaaaaaaataataacaactaaATAAAATGAGGGATAAAATATTGATCAGACAATAAGAGTCAGTTTAAAAATATATGTATAAAACTATTTACAGTTAAAAATACAACCGTCACAGAATGAAACTATTTACAAGATGAGAGAGCAATTCATGGATACTACCCTGTCTAAAGTATTGATTCATTTTCTAAAAGTTTTCTAAAAGTTTTAAAGTCGGCTGATTCTCAAAGGACATCAGGTAAGCTATTCCAAAGCTTGTGCGCCTGATAACGCCAGGACTTAAGTCCGAACCTAGTGGTGAAAGATAATAAAACACTCCATTGTCCACCATCTTAAAAATAGTGtgcataaaaagaaaattagtcCTGGAAGGTTGTGGATTCAACTCCCATTAGGAGGACTCTGAATTTTTTCAGAGGTCATTTTTCCATGAGGAGCACATGCATTTCCTTTGGCGGCATCCTTTGTTCTCAGATACTTCCTAGTCATCCAGGTAGTCACATCGTAAAAGCATGTCAACTGATTTACTTTTACTTCATGACAGGGACCTTTTTGAGTGTTCCCCAGTTCTTCCTACACCAGCATATGGTGCTAAAGATAAAGCACACAAAATTGGATTGCAGATCTTTGAAGAATTGCCAGGAACATTCACAGGCAAAGCTAAGTTCTTTGCCCGACAGGATGGTAGTGAAGATGTGTTTGAGAAGGATGGTCGCACTGCTTTGTTCAGTGCATTGGTGCATAGCCGCACTGATGATATGCAAGTGAAATTTGAATTGCCTCAACTTCCAAGTGGTTCTAAGACCCTGCACTCTTTGGCTACTGAACAGAGAGAGAGTGCAGATGATGAAGGCTTTGAATCGCTGGAGACGAGCTCTAACTCATCAACAACGTCAGAGCAGGCCACACTTACACAGGAGAACACAGATATCTGGTCTGCTGCATTAGAACTACCTTCACAGAAATTTTATACATGGGAGATGGAGGGAAGACGAGAACTGTTTAACGAGAAGCCTTTTCTCTCAGAAGCAGGACCTGCTGTATTTGATGCGCTCTACAACACTGTGATTCGTCAAGTCTCATATATAGTGAGGTCTCCCAGTTTAAGCTGCAACATGGTTTCTTTGCATACCCTGATCAAGGATTCTATTAATGTGCTGATTGGTGTGCCCTCTGGAACATTTCATCTGGATAAGGTTGCCCAGTGTTTTAGAGTCACTGAACAGGTCCGTCTGTCTGGTACATCACCTGAGATGCTTGCTAGCATCTTGGCTCGAATGGCGGCCACGGGAACAGATTACATTCAGCTGAACAAGTTTGCAACTCATCAACGAGGACACACAGCTGGTCTTGTTCTACAAGCTTTCTTGGGGGCTTTGCAAAACTATTTACACTGCTACAGGGCTGCTGTCTTATCAGTGAATGTGTCTTCAGTGCAAAGCCCTCTCATGTTAACATTTGCCTTTGAGAATATAGCAAGACAGTTAAGGTTTCTGGCAAATGTGTGCATGTGTTCTCAGGCATTTAAAAAGGCTCCAGGTGATCCAAAAGTCAAGTTTCCTACAGGTGTTAAACTGTTGACTTACCTGTACCAACTGTGTCTGGAGCACTCAAGTTCCAATTTTTATCCCATCTTGTTGTCTCTTCTAAAACACAGTGTTCTGCCATACATCATGTTTGTCCAAACTTGGGTTTTCAAGGGTGTCTGTCATGACATGTTTGGCGAGTTTATGATTGAAATGGATGAGCAGTATTTAGCATACCGAGATAAGCACTTTTGGACACAGGGCTTTGTGATGGCTGGTCGTGACAAGCTTGATTGTGTGCCATTATTTCTGAGTGAACTGGCAGATGATATATTTGTTTGTGGTAAAACGATCAACTTACTGAAGCTATGCTGTCCAGAGcacTTTTTGTGTGATCCTGGTATTCCGCTGCCCAGGATGGAGGTGACATTTTCAATGCGGCGGCTGAATAAAATTGAAGAGGAATGCAAGCAGTACATGGCTGCAATACAAATAATGCATAGACAGCTACAAGAAAAGAGGAAGAATGAGAGGAAAGCTGTTGAGGACGAAAAGCAACGAACAATACTTGAAGAACGGGAAAGAACAGAAAAAGCTTTGTCAGAGATAACAGaCCTTATTCAGAAAGCTAAGAACGCAGTTGAGCTGAAGAAGCGTGAAGACCTCAACATGCTCAAGGAACAGATGGAAGAGGCATTTAAACATAAAGCTTTGgcaagaaaacaagaacaagaagatgATGCCAAATATCTTCAAGAAGCGGAACAGAGAGAAGCCACCACAGCTTCAGTAGAGGAGGAGTTGAAAAACAAAGCGAGGGAAGAGTTGATCAAGTACTACGAGGAACTTAGGCGTGAAATGGAATACAGAGAATTCCGTGCACAGTGGCGCATCCGTCGCAGGGAACTGGACTCTGCTAGAGCCCAGTTCCTGGCCCAGGAGCAATCCCGGTTAGACAGCTTGGAGGAACAAATGACACTTGCCTCTGGTGCCCAGACCCCTGCTAGAACACCAGATTTACCTGATGCGCAGCCAAGGAGAGAAGTTGAAGAAAAAACTTCAACTGTTTCTAAGGATGAAAGAGTATCTACTCCGGTTTCAGTTCCGAGTCCAAGTCTTGTGTCACTTATCGCCAGTGGTGTAAGGACGGATGCTTTATTGAGATCAGAGCAGCAAAAGAACTCTGCTGGTTTAGCAGATTCCATTGCTGTAACAGCAGATATTGTTGCATCTGAAGAAAGTGTCTCCAGCGAGAACGAAAGTGCAAGTGGTGAAAAGTTAAAAGTACAAACTACACAACTGAGCTCTGAAGCAGCTGCTTCAGACAACAGGGCGAGAAAAACTTGGGATAATCCTGAGGAGAGCGCTGCGCGGCTTGAAAAGGTTAAGGAAGAAGGTACTGGAAGAAAGACATGGGAAACGCCTGATGGTGAACTAAAGATCGCTTCTCCTCTCCCGAGATCACATCCTTCAGACTCTTCAGTACAGTTCGCCATTTACGGTGATAAACGAAAGAGTGTCGAGGAAAAGCAGACACCAGGTTCTGGCTTACATGACGATGCTTTTAAAACCAACATGCCTCACGTTTCTGATTCATCAATGCAAAACATTCTCTACCCCAGTACACCCTCGGTTCCGACATCAGGCCTGGATGCTCAGGCCTCTAGCTTTCAAACTCAGCCCTCTGATTCGGATTCTGGAGGCCTGGTTACTGGCCATCCTTCCGACTCCACGGCTCAAGACATTTTCTATGGTAGCAGCAGAACTCAAGTGTCTCCTGAAGCTTCCTCACAAGGGCACCCTTCCGACTCTTCAGTACAGGGTCTCATGTACATAAGCGGTGCCCAGGAAAGAGCCAGTTCTGAAAGTCGGCTTTCAGAACACGGCCACCCGAGTGACTCATCTGTCAGCACCCTCTTGTACCCCACAACTGTGAACACGCCTATCCCCCATAGCCCCCGTCTTTCCCCGCACGGTCATCCCTCTGATTCTCAAGTGTCTCTCTGTCAAGACAGCGGTAACGGTCTCAATACAGCGCAGATTTTGCGTCACAGCTCAAGGTCAACATGGCAGGATCCATCGGATGCCTCGGTGCAGAAACTTCTCGGGGACATGTCCATTTTGGGAGAGAGCCAACATACCACCCGTGGTACCCCTCCCCCAAGCGTGGTTCAAGATATTCTGTACCCTGGCCCTGACACACAGTCAGCATCTTCTGTCTGTCATTCCCGCGGCACCCAACCCCAAAGCGTAGCCCAGGACATTTTGTACCCAAGAGGAGATGAGTCGGGTCAACTGCTTTCAGCAGTTCACACTCGTGGGGCCCCTCCCCCGAGTGTTATTCAGGACATTATGTACCCAAGCGGGGAGGGAACAGGAAGAGAGGAGACGAGAGTGTCAACTCGGGGACAGGAACCTGAGGTGAAGATAACGAAGATTATGTATTACGTCAAAGACAGTGAAGGGACAAAAGAGGTAGAACCACAGTCCAAGCAGTTGGAGTTTGAGGATGTGTGGCTAGCGTCTCAGGTGGAACCGCTTCAGGACAACTTTGATTTATTGGACGAAATACCTTCGTCAAATTTACTTCAAGGTGCTTTGGGAACCTTTCCAGCGACACAAGGTTCCGATGACGGGGCTACTGACGCGGCGCAGCTgatgtcacttccggttttaCTTCAGAGATGTGTCATGGCGCCTGTTCTAGCACAGGTGTCCTTGGTAAATTCAGCAATCGTGGCGTACTTTATGGACGATCTTCACATCAACAAACACTTCAACTTGTTCAAGAAATTGCTGTTCATGGAGGATGGCGAGTTTTCACTCTCACTGTCAAGCCAGCTGTTTGAGAAGGTATTTGGTTACTTGCTTGACTTGTAAGACAAACGCATTGGAAAAGATAGCCCCGCGCGAAAATGATCACACTTAACAGAGTtacacccacagactcaaaagctataAACTCCCAGCGCAACATATTAAGCAGTTCCACAGTAATGTGCTggttaatagctttcatttgaatggtcacacttaagagagtttcacccacagactctaAAGCTAT

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF19340 all species →	GCP6_N	Gamma-tubulin complex component 6 N-terminus	Family	Interproscan
PF17681 all species →	GCP_N_terminal	Gamma tubulin complex component N-terminal	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR045818 all species →	Domain	Gamma-tubulin complex component 6, N-terminal	Interproscan
IPR007259 all species →	Family	Gamma-tubulin complex component protein	Interproscan
IPR041470 all species →	Domain	Gamma tubulin complex component protein, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19302 all species →	GAMMA TUBULIN COMPLEX PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000226 all species →	Biological Process	microtubule cytoskeleton organization	Interproscan
GO:0000278 all species →	Biological Process	mitotic cell cycle	Interproscan
GO:0000922 all species →	Cellular Component	spindle pole	Interproscan
GO:0000923 all species →	Cellular Component	equatorial microtubule organizing center	Interproscan
GO:0000930 all species →	Cellular Component	gamma-tubulin complex	Interproscan
GO:0005813 all species →	Cellular Component	centrosome	Interproscan
GO:0005815 all species →	Cellular Component	microtubule organizing center	Interproscan
GO:0007020 all species →	Biological Process	microtubule nucleation	Interproscan
GO:0031122 all species →	Biological Process	cytoplasmic microtubule organization	Interproscan
GO:0043015 all species →	Molecular Function	gamma-tubulin binding	Interproscan
GO:0051011 all species →	Molecular Function	microtubule minus-end binding	Interproscan
GO:0051225 all species →	Biological Process	spindle assembly	Interproscan
GO:0051321 all species →	Biological Process	meiotic cell cycle	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for FUN_051944-T2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.