Detailed information of FUN_052242-T1 in Siderastrea siderea

Genomic Location: contig_84:1884402...1898803
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF21399
all species →		TERT_CTelomerase reverse transcriptase, C-terminal extensionDomainInterproscan
PF12009
all species →		Telomerase_RBDTelomerase ribonucleoprotein complex - RNA binding domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR003545
all species →		FamilyTelomerase reverse transcriptaseInterproscan
IPR049139
all species →		DomainTelomerase reverse transcriptase, C-terminal extensionInterproscan
IPR021891
all species →		DomainTelomerase ribonucleoprotein complex - RNA-binding domainInterproscan
IPR000477
all species →		DomainReverse transcriptase domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR12066
all species →		TELOMERASE REVERSE TRANSCRIPTASEInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000333
all species →		Cellular Componenttelomerase catalytic core complexInterproscan
GO:0003677
all species →		Molecular FunctionDNA bindingInterproscan
GO:0003721
all species →		Molecular Functionobsolete telomerase RNA reverse transcriptase activityInterproscan
GO:0007004
all species →		Biological Processtelomere maintenance via telomeraseInterproscan
GO:0042162
all species →		Molecular Functiontelomeric DNA bindingInterproscan
GO:0070034
all species →		Molecular Functiontelomerase RNA bindingInterproscan
GO:0003964
all species →		Molecular FunctionRNA-directed DNA polymerase activityInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K11126TERT, EST2; telomerase reverse transcriptaseEC:2.7.7.49
DNA replication proteinsko03032deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_052242-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
8TPM > 0
7Conditions
12.8Max TPM
0.6Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 0 0.00 0.00
holobiont · low.pH Control.temp 20 1 0.53 10.62
holobiont · control.pH_high.temp 20 1 0.64 12.80
holobiont · control.pH Control.temp 19 0 0.00 0.00
Whole organism 4 4 4.44 4.80
unannotated 1 1 4.69 4.69
live coral tissue/skeleton 1 1 5.64 5.64

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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