Detailed information of FUN_052442-T3 in Siderastrea siderea

Genomic Location: contig_85:1136581...1218153
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF13768
all species →		VWA_3von Willebrand factor type A domainDomainInterproscan
PF00644
all species →		PARPPoly(ADP-ribose) polymerase catalytic domainFamilyInterproscan
PF00533
all species →		BRCTBRCA1 C Terminus (BRCT) domainFamilyInterproscan
PF08487
all species →		VITVault protein inter-alpha-trypsin domainFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR002035
all species →		Domainvon Willebrand factor, type AInterproscan
IPR013694
all species →		DomainVIT domainInterproscan
IPR012317
all species →		DomainPoly(ADP-ribose) polymerase, catalytic domainInterproscan
IPR036465
all species →		Homologous_superfamilyvon Willebrand factor A-like domain superfamilyInterproscan
IPR001357
all species →		DomainBRCT domainInterproscan
IPR036616
all species →		Homologous_superfamilyPoly(ADP-ribose) polymerase, regulatory domain superfamilyInterproscan
IPR036420
all species →		Homologous_superfamilyBRCT domain superfamilyInterproscan
IPR004102
all species →		DomainPoly(ADP-ribose) polymerase, regulatory domainInterproscan
IPR031273
all species →		FamilyProtein mono-ADP-ribosyltransferase PARP4Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR46530
all species →		PROTEIN MONO-ADP-RIBOSYLTRANSFERASE PARP4Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003950
all species →		Molecular FunctionNAD+-protein poly-ADP-ribosyltransferase activityInterproscan
GO:0005737
all species →		Cellular ComponentcytoplasmInterproscan
GO:0140289
all species →		Biological Processobsolete protein mono-ADP-ribosylationInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K10798PARP2_3_4; poly [ADP-ribose] polymerase 2/3/4EC:2.4.2.30
DNA repair and recombination proteinsko03400deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_052442-T3 across 85 RNA-seq samples of Siderastrea siderea. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
0TPM > 0
7Conditions
0.0Max TPM
0.0Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 0 0.00 0.00
holobiont · low.pH Control.temp 20 0 0.00 0.00
holobiont · control.pH_high.temp 20 0 0.00 0.00
holobiont · control.pH Control.temp 19 0 0.00 0.00
Whole organism 4 0 0.00 0.00
unannotated 1 0 0.00 0.00
live coral tissue/skeleton 1 0 0.00 0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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