Detailed information of FUN_052481-T3 in Siderastrea siderea

Genomic Location: contig_85:1599334...1610593
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00004
all species →		AAAATPase family associated with various cellular activities (AAA)DomainInterproscan
PF21126
all species →		KATNA1_MITKatanin p60 subunit A1, MIT domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR003959
all species →		DomainATPase, AAA-type, coreInterproscan
IPR027417
all species →		Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR048611
all species →		DomainKatanin p60 ATPase-containing subunit A1, MIT domainInterproscan
IPR050304
all species →		FamilyMicrotubule-severing AAA ATPaseInterproscan
IPR003593
all species →		DomainAAA+ ATPase domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR23074
all species →		AAA DOMAIN-CONTAININGInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005524
all species →		Molecular FunctionATP bindingInterproscan
GO:0016887
all species →		Molecular FunctionATP hydrolysis activityInterproscan
GO:0015630
all species →		Cellular Componentmicrotubule cytoskeletonInterproscan
GO:0051013
all species →		Biological Processmicrotubule severingInterproscan
GO:0140603
all species →		Molecular Functionobsolete ATP hydrolysis activityInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K07767KATNA1; katanin p60 ATPase-containing subunit A1EC:5.6.1.1
Cytoskeleton proteinsko04812deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_052481-T3 across 85 RNA-seq samples of Siderastrea siderea. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
0TPM > 0
7Conditions
0.0Max TPM
0.0Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 0 0.00 0.00
holobiont · low.pH Control.temp 20 0 0.00 0.00
holobiont · control.pH_high.temp 20 0 0.00 0.00
holobiont · control.pH Control.temp 19 0 0.00 0.00
Whole organism 4 0 0.00 0.00
unannotated 1 0 0.00 0.00
live coral tissue/skeleton 1 0 0.00 0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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