Detailed information of FUN_052485-T2 in Siderastrea siderea

Genomic Location: contig_85:1739761...1757751
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00476
all species →		DNA_pol_ADNA polymerase family AFamilyInterproscan
PF21099
all species →		POLQ_helicalDNA_pol_Q helicase like region helical domainDomainInterproscan
PF20470
all species →		HTH_61Helix-turn-helix domainDomainInterproscan
PF00270
all species →		DEADDEAD/DEAH box helicaseDomainInterproscan
PF00271
all species →		Helicase_CHelicase conserved C-terminal domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR019760
all species →		Conserved_siteDNA-directed DNA polymerase, family A, conserved siteInterproscan
IPR001650
all species →		DomainHelicase, C-terminal domain-likeInterproscan
IPR014001
all species →		DomainHelicase superfamily 1/2, ATP-binding domainInterproscan
IPR036397
all species →		Homologous_superfamilyRibonuclease H superfamilyInterproscan
IPR027417
all species →		Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR002298
all species →		FamilyDNA polymerase AInterproscan
IPR001098
all species →		DomainDNA-directed DNA polymerase, family A, palm domainInterproscan
IPR012337
all species →		Homologous_superfamilyRibonuclease H-like superfamilyInterproscan
IPR048960
all species →		DomainPOLQ-like, helical domainInterproscan
IPR046931
all species →		DomainDNA polymerase theta-like, helix-turn-helix domainInterproscan
IPR011545
all species →		DomainDEAD/DEAH box helicase domainInterproscan
IPR043502
all species →		Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR10133
all species →		DNA POLYMERASE IInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003887
all species →		Molecular FunctionDNA-directed DNA polymerase activityInterproscan
GO:0006260
all species →		Biological ProcessDNA replicationInterproscan
GO:0003676
all species →		Molecular Functionnucleic acid bindingInterproscan
GO:0006261
all species →		Biological ProcessDNA-templated DNA replicationInterproscan
GO:0003677
all species →		Molecular FunctionDNA bindingInterproscan
GO:0005524
all species →		Molecular FunctionATP bindingInterproscan
GO:0006302
all species →		Biological Processdouble-strand break repairInterproscan
GO:0097681
all species →		Biological Processdouble-strand break repair via alternative nonhomologous end joiningInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K02349POLQ; DNA polymerase thetaEC:2.7.7.7
DNA repair and recombination proteinsko03400deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_052485-T2 across 85 RNA-seq samples of Siderastrea siderea. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
0TPM > 0
7Conditions
0.0Max TPM
0.0Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 0 0.00 0.00
holobiont · low.pH Control.temp 20 0 0.00 0.00
holobiont · control.pH_high.temp 20 0 0.00 0.00
holobiont · control.pH Control.temp 19 0 0.00 0.00
Whole organism 4 0 0.00 0.00
unannotated 1 0 0.00 0.00
live coral tissue/skeleton 1 0 0.00 0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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