Gene detail

Detailed information of FUN_052607-T1 in Siderastrea siderea

Genomic Location: contig_86:626467...651093
NR annotation: no NCBI-NR hit recorded
Species abbreviation SSIDE · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

FUN_052607-T1

GAGACTATTTGACAAGCTGCATTTCTTGGACTGCTCTGACAACAAATCCAAACCAGATTACCGAAAGGTAAAGTGAACATTGTATTGATACAAAAACCGCACGAACCCAAATATATTCCAAGCTGTGAAACTTTTTTACCACGCGGCAACAAAACTACATTGTTCCACGGCGTTAATGAAAGTTCAACGTGCTTCGTCGCAAATATATAATTGGAAAGGAAAACCGAAGGACTGTAGATCGTAAACATCATTGTATAAGTAAACTGTTTACGATCATAGAAAGAGTAACTTCAGACGCGAACGTCGACTTACTCGGCTGCCAATACAGAAACACGTGTTCTTCGTTGTGTTTGATTTCGTTTTAACGCTTTGTTCTCTTTTACAGTGTTTCACACCGACAGATCTACTTAAATTCGACGGATCTCCGTCGTCAAGAGCGCTAAATTCCACGGAATTTGCCGAGTTCAGTCCAGTGATTGTATATTGCCTGTTGCCTGCGCGTGAAAAGGATGATGGTCAACAACCCTGCGTACTTTATCCCAAGAACCACAGCGAACTTTTCAACTCGTTTGCGAGGAATTTCAGTCATGGGGAACAGGGGATGACAGAGGAAGCTTTAGAGGGCATTCTCGAGCAGATAAACCAAACGATCGGGGAATTTTTAACTGACAAGAAGTGTTTCTCAGCTGAGAGCATCATCAAAGAGATAGAAGAAGAGGAACACCACGAGGAGGAAGAGCATGGCGGAGAGCATCATGAAGAAGGGGAGAAGATTCTCAATCAACACAACTTTGAGAAAGCTTGTGCAAGCATCATCCTACATCTGGTGCAAGGATACTGTATTCAAGAAGGCCATGGGCACAATGAGTTGGAATCAGAACTGCCTTCACAAGAGTTCTTCATCAGTAATCTCTTTAATGGAAAAAGCCACCTATCTGAAGAAGACTTAGAAGAGATTGCTGAAAGTCTCAGCATTGGCAAACCCTCTAAAACCTCAGAGGTCTCATCATTGAGTGGAGGTCATGATGATCACAATCATAGGCGCCGCAGGTCAGCTGGATCAGCCTCAGCGGCATCTCATGCCCTTCATCGTCGTGCTGCTGATCCTCATGATCATGGTCATCAAACCAATGGTGGAAGTGGCACTtgttATTCAGTGGAGGACATGCTGACAGTTTTTCACATTGATCACTCTGTTGGTGCTGATAGTTATGACTTCAAACAGCTTTGCCCTGCATTTATTCAACAAGCTAAAAGTGGAGCTTGCAAAGATCagtcaaacaaaacaacaacaactgacaAAGAAAAGCATATGGGAAAAATTTGGGGTTATGGCTTTGCTGCTGTGACAATAATTAGCATTACATCTCTGGCGGGAGTGGCCACTATTCCATttgttggaaagaaaatgtacAAGAAGATCTTGGCTATGCTGGTGGCACTTGCTGTGGGAACACTTGCTGGAGACGGTTTACTTCATCTGATACCTCATGCATTAGGACTCCATGGTCATGATGAAGCAGAGGCTGGTTGTGATAGTCATGATGATCATTCAGAAGAGAGTGCATTCATTTGGAAAGCTTTGGTTGTACTGGTTTCTATTTATGCTTTTTTCCTGTTTGAAACTTTGATGCATTTGGGATTTAAGAGCAAAGTTGGTGAACATGGAGGCCACAGTCACGTTGATGTTGAGCTTCCTGGTCCTTCAAGTCGGCACATGAGCTTCAAAAGGGAAAGGAAATGTTCCAAGTTTGAACATCATGAAGGAGCCCCTCCACTTGGGAACAGTGATGAAAAACCACCAATGGAAAATGGTGACATCATTTTGACAAATGTGAATACTAAAGGCGACTTTGATGATCACGTTGATGGAATTCCCCAAGATACAACAGTCAAATCAAAGAAACCCCTTAAAACAAGCCTTTCACGCCGTTCTGTGTTCAGCGATCAACAGGaaaagaaaactttgaaaaagaTATCTGCCGTGGCATGGATGATCATTATAGGAGATACTCTTCATAACATAAGTGATGGATTAGCTATTGGTGCAGCCTTCTCAGAAGGTGGTAATTCTGGAGTATCGGGAGGAATCAGTACCTCAATTGCTGTGTTTTGTCATGAACTTCCTCATGAACTTGGAGATTTTGCCGTCCTGCTTACAGCTGGTATGTCAATCAAGATGGCACTGCTAGCAAACTTATTTTCCGCTATGTCATGTTATATTGGCTTAGCCATTGGCATTTATATTGGCCAGCAGGCTGATGCCAGGTTCTGGATCTTTGCTATTGCTGGCGGGGTGTTCCTTTATGTTGCACTGGTTGACATGGTAAGACATATTGAACCCTTTCACTGTCTAGCTTGACCCTTAACGCCCTGAAATGAAGATGTGTAtcctccttactgttctccacacatttcttgtggaacaagttaggagaatttgtctaaatatgaAGACATCTTATGTTaacttggtgatcacttcctttattctcatcacttggaTGTTTGAGTAAGTACATTATAGTGAAGGTGCaaagagaaattccattttcatcactgttaggtcTTAAAACTGTTTCTGGAAGGGGCAGGGACTGCTACAGAATGTAATCTTTATTGAACCCTTTAAGCTTCAATTatatcaacatgtatgttctcctcactgttgtcCATATATTTCTTGTGGTATAAGTTGAGAAAATTGATAGCACATCAAGAAATTTTCTTTGGTGATCATATTCTTTATTCTCTTGACCTGTGTGTTCATCATGTAGTGATATCCTAAGGAGAGATTCAATGTTTGTCACCACTGGAGCCTAAAGGGTTAATAATTTAAAATACATTATATATTATTTTATGtcagtgtaagaacctgacaactGAGATTTTCTATGTTTAACAAGCTATTGTTTTAAAATgtcttgtttcctttgttttatgtcatCTGAGTTTTAcacaggttcttacactgaTGTAAAGCCAAAAACTAAAGCTATCTATGTGAGCTCATAGCACACTGAGTTGTATTCATGTACATTAAGATTAATTGGACTAAAATTATCGACAGTACCAGTTATGAGTAATGTTTTTTATTTGAAGCTGCAGGTATCCTTCTTCTTCTTAAAATACTCTTTATGCCCCCTCCCTTTATTTAATGTTGTATGGCTGCAAAGCTTTACATTTGTGGAACAAAACAAGCACCATTagttggggggaggggagatATTCTGGTGAGGAGAGGAGATTTATCGTTAAGAGGTAGAAAAACACCCTCTGAAATAAAGCTTTTTGATGTCATTAATTGTTGATTATCAACTTTTTTCCTGTAGCTTCCTGACCTGATGCACAGCGAGACATTGCAGACAGAACCTGTGGTCACATTTTTGATGCAAAACTTTGGTTTACTGCTTGGTTTTTCCATCATGTTGATAATTGCCTTGTACGAGGAGGA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02535 all species →	Zip	ZIP Zinc transporter	Family	Interproscan
PF21116 all species →	EF-hand_Zip	Zip protein EF-hand	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050799 all species →	Family	Zinc Iron Protein (ZIP) Transporter	Interproscan
IPR003689 all species →	Family	Zinc/iron permease	Interproscan
IPR049406 all species →	Domain	Zinc transporter ZIP4/12, EF-hand	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12191 all species →	SOLUTE CARRIER FAMILY 39	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005385 all species →	Molecular Function	zinc ion transmembrane transporter activity	Interproscan
GO:0005887 all species →	Cellular Component	plasma membrane	Interproscan
GO:0006875 all species →	Biological Process	obsolete intracellular metal ion homeostasis	Interproscan
GO:0071578 all species →	Biological Process	zinc ion import across plasma membrane	Interproscan
GO:0140410 all species →	Molecular Function	monoatomic cation:bicarbonate symporter activity	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0030001 all species →	Biological Process	metal ion transport	Interproscan
GO:0046873 all species →	Molecular Function	metal ion transmembrane transporter activity	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K13752	SLC24A4, NCKX4; solute carrier family 24 (sodium/potassium/calcium exchanger), member 4	-	Transporters	ko02000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.