Detailed information of FUN_052612-T1 in Siderastrea siderea

Genomic Location: contig_86:702337...723716
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF21116
all species →		EF-hand_ZipZip protein EF-handDomainInterproscan
PF18292
all species →		ZIP4_domainZinc transporter ZIP4 domainDomainInterproscan
PF02535
all species →		ZipZIP Zinc transporterFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR050799
all species →		FamilyZinc Iron Protein (ZIP) TransporterInterproscan
IPR049406
all species →		DomainZinc transporter ZIP4/12, EF-handInterproscan
IPR041137
all species →		DomainZinc transporter ZIP4, N-terminalInterproscan
IPR003689
all species →		FamilyZinc/iron permeaseInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR12191
all species →		SOLUTE CARRIER FAMILY 39Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005385
all species →		Molecular Functionzinc ion transmembrane transporter activityInterproscan
GO:0005887
all species →		Cellular Componentplasma membraneInterproscan
GO:0006875
all species →		Biological Processobsolete intracellular metal ion homeostasisInterproscan
GO:0071578
all species →		Biological Processzinc ion import across plasma membraneInterproscan
GO:0140410
all species →		Molecular Functionmonoatomic cation:bicarbonate symporter activityInterproscan
GO:0016020
all species →		Cellular ComponentmembraneInterproscan
GO:0030001
all species →		Biological Processmetal ion transportInterproscan
GO:0046873
all species →		Molecular Functionmetal ion transmembrane transporter activityInterproscan
GO:0055085
all species →		Biological Processtransmembrane transportInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for FUN_052612-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_052612-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
41TPM > 0
7Conditions
254.7Max TPM
30.5Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 7 19.32 79.15
holobiont · low.pH Control.temp 20 11 50.44 254.68
holobiont · control.pH_high.temp 20 8 18.72 105.74
holobiont · control.pH Control.temp 19 9 26.02 122.29
Whole organism 4 4 37.74 38.95
unannotated 1 1 60.27 60.27
live coral tissue/skeleton 1 1 113.47 113.47

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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