Detailed information of FUN_052643-T1 in Siderastrea siderea

Genomic Location: contig_86:1243100...1256991
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
No Pfam domain signature was detected for FUN_052643-T1. This gene does have a gene model — the search simply returned no hit.
 InterPro
InterPro termTypeDescriptionSource
IPR039902
all species →		FamilyCoiled-coil domain-containing protein CCDC148/CCDC112Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR21549
all species →		MUTATED IN BLADDER CANCER 1Interproscan

 Gene Ontology
No Gene Ontology signature was detected for FUN_052643-T1. This gene does have a gene model — the search simply returned no hit.
Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for FUN_052643-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_052643-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
17TPM > 0
7Conditions
141.2Max TPM
8.2Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 3 2.72 24.08
holobiont · low.pH Control.temp 20 1 1.44 28.79
holobiont · control.pH_high.temp 20 3 9.86 141.21
holobiont · control.pH Control.temp 19 4 16.29 107.13
Whole organism 4 4 17.08 22.82
unannotated 1 1 14.31 14.31
live coral tissue/skeleton 1 1 21.84 21.84

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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