Detailed information of FUN_053049-T1 in Siderastrea siderea

Genomic Location: contig_88:237734...266353
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00595
all species →
PDZPDZ domainDomainInterproscan
PF00788
all species →
RARas association (RalGDS/AF-6) domainDomainInterproscan
PF01843
all species →
DILDIL domainRepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR000159
all species →
DomainRas-associating domainInterproscan
IPR001478
all species →
DomainPDZ domainInterproscan
IPR037977
all species →
DomainAfadin, cargo binding domainInterproscan
IPR002710
all species →
DomainDilute domainInterproscan
IPR008984
all species →
Homologous_superfamilySMAD/FHA domain superfamilyInterproscan
IPR036034
all species →
Homologous_superfamilyPDZ superfamilyInterproscan
IPR028842
all species →
FamilyAfadinInterproscan
IPR029071
all species →
Homologous_superfamilyUbiquitin-like domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR10398
all species →
AFADINInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0007165
all species →
Biological Processsignal transductionInterproscan
GO:0005515
all species →
Molecular Functionprotein bindingInterproscan
GO:0005911
all species →
Cellular Componentcell-cell junctionInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K05702AF6, MLLT4; afadin-Leukocyte transendothelial migrationko04670deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_053049-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
18TPM > 0
7Conditions
69.4Max TPM
5.8Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 3 3.76 39.85
holobiont · low.pH Control.temp 20 2 1.21 17.03
holobiont · control.pH_high.temp 20 5 2.70 17.47
holobiont · control.pH Control.temp 19 2 1.78 25.44
Whole organism 4 4 60.48 69.43
unannotated 1 1 27.96 27.96
live coral tissue/skeleton 1 1 33.04 33.04

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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