Detailed information of FUN_053080-T1 in Siderastrea siderea

Genomic Location: contig_88:459258...473313
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00390
all species →		malicMalic enzyme, N-terminal domainDomainInterproscan
PF03949
all species →		Malic_MMalic enzyme, NAD binding domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR036291
all species →		Homologous_superfamilyNAD(P)-binding domain superfamilyInterproscan
IPR001891
all species →		FamilyMalic oxidoreductaseInterproscan
IPR037062
all species →		Homologous_superfamilyMalic enzyme, N-terminal domain superfamilyInterproscan
IPR012301
all species →		DomainMalic enzyme, N-terminal domainInterproscan
IPR046346
all species →		Homologous_superfamilyAminoacid dehydrogenase-like, N-terminal domain superfamilyInterproscan
IPR012302
all species →		DomainMalic enzyme, NAD-bindingInterproscan
IPR015884
all species →		Conserved_siteMalic enzyme, conserved siteInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR23406
all species →		MALIC ENZYME-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0004470
all species →		Molecular Functionmalic enzyme activityInterproscan
GO:0004473
all species →		Molecular Functionmalate dehydrogenase (decarboxylating) (NADP+) activityInterproscan
GO:0005739
all species →		Cellular ComponentmitochondrionInterproscan
GO:0006090
all species →		Biological Processpyruvate metabolic processInterproscan
GO:0006108
all species →		Biological Processmalate metabolic processInterproscan
GO:0016616
all species →		Molecular Functionoxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptorInterproscan
GO:0051287
all species →		Molecular FunctionNAD bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K00029maeB; malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+)EC:1.1.1.40
PPAR signaling pathwayko03320deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_053080-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
6TPM > 0
7Conditions
37.8Max TPM
1.1Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 0 0.00 0.00
holobiont · low.pH Control.temp 20 0 0.00 0.00
holobiont · control.pH_high.temp 20 0 0.00 0.00
holobiont · control.pH Control.temp 19 0 0.00 0.00
Whole organism 4 4 10.28 12.25
unannotated 1 1 37.79 37.79
live coral tissue/skeleton 1 1 10.66 10.66

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

TOP