Detailed information of FUN_053127-T2 in Siderastrea siderea

Genomic Location: contig_88:1068849...1096662
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF11817
all species →		Foie-gras_1Foie gras liver health family 1RepeatInterproscan
PF12584
all species →		TRAPPC10Trafficking protein particle complex subunit 10, TRAPPC10FamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR017868
all species →		RepeatFilamin/ABP280 repeat-likeInterproscan
IPR045126
all species →		FamilyTrafficking protein particle complex subunit TRAPPC10/Trs130Interproscan
IPR011990
all species →		Homologous_superfamilyTetratricopeptide-like helical domain superfamilyInterproscan
IPR021773
all species →		DomainTrafficking protein particle complex subunit 11Interproscan
IPR022233
all species →		DomainTRAPP II complex TRAPPC10, C-terminalInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR13251
all species →		EPILEPSY HOLOPROSENCEPHALY CANDIDATE 1/TMEM1Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0006891
all species →		Biological Processintra-Golgi vesicle-mediated transportInterproscan
GO:0034498
all species →		Biological Processearly endosome to Golgi transportInterproscan
GO:0048193
all species →		Biological ProcessGolgi vesicle transportInterproscan
GO:1990071
all species →		Cellular ComponentTRAPPII protein complexInterproscan
GO:0005515
all species →		Molecular Functionprotein bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for FUN_053127-T2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_053127-T2 across 85 RNA-seq samples of Siderastrea siderea. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
0TPM > 0
7Conditions
0.0Max TPM
0.0Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 0 0.00 0.00
holobiont · low.pH Control.temp 20 0 0.00 0.00
holobiont · control.pH_high.temp 20 0 0.00 0.00
holobiont · control.pH Control.temp 19 0 0.00 0.00
Whole organism 4 0 0.00 0.00
unannotated 1 0 0.00 0.00
live coral tissue/skeleton 1 0 0.00 0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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