Gene detail

Detailed information of FUN_053245-T1 in Siderastrea siderea

Genomic Location: contig_88:2578435...2610993
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

FUN_053245-T1

atggcggacgctGGTTTCTTTCGGGGTACAAGCGCGGAACAGGACAACCGGTTCCTTGACAAGCAGAAGAAGTTGTTAAAATCCATGCGTTTTGATGAGATTCTCAATAAAAAGGTGGACATGGAAAAGGTTAACCTGGATGTGATAAAACCATGGATAACAAAGAAGCTGATTGAAATTCTGGGCTTTGAAGATGACGTGGTCATGCAGTATGTTTTAAATATGCTGGAATCTGAAAAGACCCCCGATCCCAGATTTATGCAAATAAACATAACTGGTTTTCTGCAATCAAAGAATGCTCGGGAATTTATGAAAGAGCTTTGGACCCTGCTTATCAGTGCTCAAGAAAATATTGGAGGAATTCCTTCAGatttcttggaaaaaaagaaagaagaaatcaAGCAACGAAAGTTGGAACAGGAGCGTATTCAAGCTAACTTACAGAAATACCAAGGGGATCAACAACAAACAGAGCCAGATAGTACAGCTACAgatgacaatgtagccaatggatcAGCTGCTGGAGCAAATGACATCAATGAAGAGATCAGAAAAGCCAAAGAAGTAGCACAGTCACTtgcaggaagagaaAGCAGTCCTAAAAGAGGATTCAAGAAAACAAGACGGAACTCGAGTCACTCTGACAGTGAAGACAGTGATGATGAGGATGAATCCAGGAAGAAACAAGAATCAGGCAAAAATGCAGAGGACAAAGACGAGAAGAAAAGGTCCCCCTCACCAGTGAgagtgaaaaaggaaaaagatgtGGAAGAGAAGCCGAGGAGCAAGTTACTTCAACCAAAATGGAGGTCACGCCTCATGTCTTCAGCGGCACGGCCAGTTGAGAGAGATAAACCAGGCTGGGACAAGGAACACATGCAGAATGTTGCCCTGACTAAAACTACTGATATCAACGTGGTCCTGGCAGGCGATTCAATCATCAAAGGCCTTAGTCGCTATCCTAGGATTTGGAGGAAGTATTTTGCACCTCTTAAATCACTCAACTTTGGTATAGGTGGAGACAGGACTCAACATGTTCTGTGGCGACTTCAAAACGGGGAAATGGAATGTGATCCTAAAGTTGTTGTGGTGCTTTGTGGCACAAACAATGTTGACAAAAACAGCTCAAGTGAAATTGCTCAAGGAATCTTAGCTATTGTGGATTACATTCGAAAGAAAAAGCCCGAGGTTAGCATCATCGTCTGTGGGATTCTCCCCAGGGATTTATATCCCAGCTTGCGGCGTGACAAGATTGATGAAGTCAATGATGAACTGTTTGAGTATATAAGCTATTCTGAAGAACTGCGGGATGAGTATGTGTACTTCCTGCCACCGGGGAAAGGGTGGACAACAAAGGGAGGACAGCTGGACGAAGCACTCTACTTCTCAGACCATTTGCACCTTATTGAGGAAGGAGACGAGAAGCTGGCTAAGTCAATTGCTCGTCTGGTGAAAGAGCTGCTAGAAACAGATGAAAATGAAGGCAACCCTGTTCCTAATAGGAAGCTGATCAAGCAAAAAGAAGTTGAAGATGCTGAGAAGGCTAGAAAAGCAGCTGCTGGGGAGAAAGAAGCAAAgcGAGAAAATTCTAGCTCCCGTTCAAGGTCAAGGTCACGCTCAGgtggaagagaaagaaaacgtTCACGTGACAAGAAAGGGCGGAAGCGCAGTAGGTCTGAGTCCTCTGCCTCACGATCCCGGTCACGCTCTAAATCGAGGTCTCGTAGTCGGGAAAGACGAAGACGTTCTCGGTCTCGCTCACCTCGCCGGGTATCTTCGTTCAACAGAGCGCGATGGTCACCATATAGACGTCGGAGGTCGCCATCTCCAAGAAGACGTTCGCCACCAAGGCGAAGAACACCACCAAGGCGAAGATCTCGTTCTCGTTCTCCGCGCCGGAAGTCACGTCGATCCCCATCTCCTCACCGGCGGTCACGCTCTGAATCAGCTTCGTCACGCTCACGGTCACGCTCTGTAAGTTTCAGCTCAAGATCTTCACGCTCTCGCTCGGGATCTCCTGGGGCCGAAACATCGCGAAAGGACAAAAACGAAAAAGGGAAAgacaaagacaaaggaaaagagaaagagaaggaAGAGGataaagaaatggaaaaagaaaacgagaAGCCAGAAAGCCCAGAAAAGACTAAAGCAGCGGGGTCTCCAAGCCCCCCACCAACACATCACCGATCAGCTTACAAAAAGCAAGAACAGCAGCAATCACCTGTCAAACAGCCTTCACCCTCATCATCATCGCCATCTCcctcacccccaccccctcaagTCAAGGAAGAGAAAGAAGACAAGGAGGAAAAAGAGAAATCACCGCCTTTACCCAAGTCGAAGAAAACGACAAGTCGCCGCTACCGCAAACATTCACCGTCGCCATCCTCTACAGAAGGTGAGTGGTCAcctgagagaaagaaaaaagcgGACTCCTCTAAAGATCACAGAAAAGAACGAGAGCGAAGTGAATCTCCACGAGACAGAACAAGGAAACGGAGAGTTTCCTCACCTTCCCCCCGAAGAAGGCGGAGGGATTCATCCCCCTCCCCAAGGAAAAAGAGAAGAGCCGACTCACGATCACCCTCCCCAAGAAGAAAACGAAGGGAACATTCCCGCTCTCCATCTCCTCCCCGAAGACGCCATCAAGAACCACGTTCTCCTCCTCCCCGAAGGAGGAGAAAATCAGATTATTCCCCCTCACCTCCCCCCAGAGAAAGACGCCGACGCCCAGAGCCATCCCCGCCACGCAGCAGGGAGCGGCGAAAGGAGAGAATGTCACCCTCGCCCCCTCCCCAGCGTAGACGACGTCGATCAAGTTCGTCACCTCCCGCTCCCGCTCGTCGGGTACAGTCGTCGCCACCTTCGGGTCGCCGTCGGGTTGAAAGGTCGCGGTCCGATGATAGAGCACCAAAAGAGCGTCGCAGATCACCTGAGCCGGAGAAAGAAGCAGGTAGAAGAAGGAAGCGGTCTGAGCGATCTTCATCTGCCTCACCAGAGCCTCCTCAGAAGCCCCAGGCTGAGAAGGCAAAGGCAAGTCAGGCTAGAAGGTCCTCGTCTTCATCCGCATCCCCTGAACCATCGACCGCTAAAAAGAAATCTCGTGAGGCTCAGGAATCTCCCAGGGGAACCCCCCCTAAAGAGGTGTCCAGGGGGAGTAGGGAGGGGAGGAGACGGTCTGCCTCGCCTGACGTGGACTCGCGGGAGCGTAAACGAGTGGAGCGTAAATCAGCTTCCATGTCACCTGATAGGCCTAAAAGTCGAAAGTCAGCACAAGCTTCTTCAGTTTCACCTGTTCGTAAAACCAAGTCACGTGCGAAACGATCCGCTTCAGCCTCACCCCCACCCGCTAAGGCGGCCAGGTCACGTGGCTCAAGACGCTCGCCATCATCTTCCTCCGAACCAGAAAGCAAATCCAGATCCCGCACTGCCAAGCAATCTCCCAAGCCCTCTGCTTCACCTGAACCTCGTCAGCAGGCTCGTGCAGCTAAGAGGAGTCCCTCGGGATCTCCGCCACGAGAGCGGGTCAAGCGGAAAGCAGCGGCCAGGAGGTCCCCAAGTGAAGAAAAGTCTCCTGAGCCTCCGGTCAGAAAGGCCCGTCGAAGCCCCTCTGGACAAGAAGAGGAGGTACCGAAGAAGTCTCCTAGTAAATCTCCTCCTGCTAAGCAGGAAAGCTCAGCCGAGGAGCAGGAGAAaactgaagagaaagaagaaaaaaaaaagaagaaacataAGAAACATAAGAAACATGGCGGctcaaaacacaaacacaagcgttcaaaacacaaaaagcacaaagaaaaaGACAAGTCACCAGCGCACTCAGAAAGTATGGACGAAGACGATACGGAAACACTGGAAAGGAAACTCCGAGAGAAAGCTCTACAGTCCATGCAAAGACACAACAAATCCCCTCCAGCACCACAGGAACCTGAAGACGATTAA

Transcript

FUN_053245-T1

GGAATTTTGAACACTCCATTTAGAATCCTGGCCTAtgctttttctttcctttattacttttcttcccttttttggCTTCAACTCTTTCCTTAATGTGTTTCTGTCTCAGTTTCTGTTTATCGTCAGCCTGTTTCTTCTGATGATCCATCCTCTCTTTCCACTGTTTTTTACTCTTCTCTTTCTCCTTCTCTCTCTTCTTCATGGCTTTTTTTAACAGTTTAGGATCATCATGTTGCTTTACACCCTCGGCTTTTTCCATGGCATGGCTCCAGGAATGTTTCTCCTTTAACTCTTTAGCTTTCTCCGCATCTGTAGTCTGTAATGTTTCCAGCTTCTTCTTGCGAGCTTCAGCTTTGGCAAGCAGTTTTGAATAGTTCTTCCCTTTAGTTCCTGGTCTCGGTTCTTTCTTAGTTTCCATGAAATCGAATTTACTAAAAACAACTTCCCCACTCTCATTCAGTACTTTTTTATTTGGTGAAGAATCGTTTTTCACGGAGTCCTTTTCGTTCTTGTGCGCAGAAAtcattttctgtttatttttctctttaactATGCTTTTGGATTTCTTTTTCTGTGGACGTTCATGGACTGTCTTTCCACTGTCCGCTTTTCGTTTTCTCTGAAAGTCTTGTAGTTTTGCATGAAGACGTGATTTCAAGTCCTCGAGGTTTCCACTGCTGACATTTTCAACGCTAAAGCTAGCTTTGGCTACTTCGCCTCCCTTCCTTTCCTCACCAGAGCTACTGATCGTTACATTTTCCTCGCTTTCCTTTTGTATTTCATGAATTGTTTTATGTTGATTAGGATCAAGTCTCGCACGTTTAGCCTTCCTCGAAGCCTCTTTGATGCTCTGTTTGGGAGCTTTTTGCTTACGATTTTTATAAAACTTGCTTGCTTTTTCCTCTTCGTCAACAGGAAGGTAATGTTTCACTGGGATAAATTCGATCAAGGAACTGAAATACGAAGAATTAGCGGCAAGACGCTTCTCTATCTCAGAGACGtcttcgtccgccatcttggtttcCACATGTGCTGGAGCCTCGCACCGATGATGCTCATCGATTGGTTATCGATTTAGCGAACGCAAAAGGCCATGTGATCAGACCAAGCGgccttcaagatggcggacgctGGTTTCTTTCGGGGTACAAGCGCGGAACAGGACAACCGGTTCCTTGACAAGCAGAAGAAGTTGTTAAAATCCATGCGTTTTGATGAGATTCTCAATAAAAAGGTGGACATGGAAAAGGTTAACCTGGATGTGATAAAACCATGGATAACAAAGAAGCTGATTGAAATTCTGGGCTTTGAAGATGACGTGGTCATGCAGTATGTTTTAAATATGCTGGAATCTGAAAAGACCCCCGATCCCAGATTTATGCAAATAAACATAACTGGTTTTCTGCAATCAAAGAATGCTCGGGAATTTATGAAAGAGCTTTGGACCCTGCTTATCAGTGCTCAAGAAAATATTGGAGGAATTCCTTCAGatttcttggaaaaaaagaaagaagaaatcaAGCAACGAAAGTTGGAACAGGAGCGTATTCAAGCTAACTTACAGAAATACCAAGGGGATCAACAACAAACAGAGCCAGATAGTACAGCTACAgatgacaatgtagccaatggatcAGCTGCTGGAGCAAATGACATCAATGAAGAGATCAGAAAAGCCAAAGAAGTAGCACAGTCACTtgcaggaagagaaAGCAGTCCTAAAAGAGGATTCAAGAAAACAAGACGGAACTCGAGTCACTCTGACAGTGAAGACAGTGATGATGAGGATGAATCCAGGAAGAAACAAGAATCAGGCAAAAATGCAGAGGACAAAGACGAGAAGAAAAGGTCCCCCTCACCAGTGAgagtgaaaaaggaaaaagatgtGGAAGAGAAGCCGAGGAGCAAGTTACTTCAACCAAAATGGAGGTCACGCCTCATGTCTTCAGCGGCACGGCCAGTTGAGAGAGATAAACCAGGCTGGGACAAGGAACACATGCAGAATGTTGCCCTGACTAAAACTACTGATATCAACGTGGTCCTGGCAGGCGATTCAATCATCAAAGGCCTTAGTCGCTATCCTAGGATTTGGAGGAAGTATTTTGCACCTCTTAAATCACTCAACTTTGGTATAGGTGGAGACAGGACTCAACATGTTCTGTGGCGACTTCAAAACGGGGAAATGGAATGTGATCCTAAAGTTGTTGTGGTGCTTTGTGGCACAAACAATGTTGACAAAAACAGCTCAAGTGAAATTGCTCAAGGAATCTTAGCTATTGTGGATTACATTCGAAAGAAAAAGCCCGAGGTTAGCATCATCGTCTGTGGGATTCTCCCCAGGGATTTATATCCCAGCTTGCGGCGTGACAAGATTGATGAAGTCAATGATGAACTGTTTGAGTATATAAGCTATTCTGAAGAACTGCGGGATGAGTATGTGTACTTCCTGCCACCGGGGAAAGGGTGGACAACAAAGGGAGGACAGCTGGACGAAGCACTCTACTTCTCAGACCATTTGCACCTTATTGAGGAAGGAGACGAGAAGCTGGCTAAGTCAATTGCTCGTCTGGTGAAAGAGCTGCTAGAAACAGATGAAAATGAAGGCAACCCTGTTCCTAATAGGAAGCTGATCAAGCAAAAAGAAGTTGAAGATGCTGAGAAGGCTAGAAAAGCAGCTGCTGGGGAGAAAGAAGCAAAgcGAGAAAATTCTAGCTCCCGTTCAAGGTCAAGGTCACGCTCAGgtggaagagaaagaaaacgtTCACGTGACAAGAAAGGGCGGAAGCGCAGTAGGTCTGAGTCCTCTGCCTCACGATCCCGGTCACGCTCTAAATCGAGGTCTCGTAGTCGGGAAAGACGAAGACGTTCTCGGTCTCGCTCACCTCGCCGGGTATCTTCGTTCAACAGAGCGCGATGGTCACCATATAGACGTCGGAGGTCGCCATCTCCAAGAAGACGTTCGCCACCAAGGCGAAGAACACCACCAAGGCGAAGATCTCGTTCTCGTTCTCCGCGCCGGAAGTCACGTCGATCCCCATCTCCTCACCGGCGGTCACGCTCTGAATCAGCTTCGTCACGCTCACGGTCACGCTCTGTAAGTTTCAGCTCAAGATCTTCACGCTCTCGCTCGGGATCTCCTGGGGCCGAAACATCGCGAAAGGACAAAAACGAAAAAGGGAAAgacaaagacaaaggaaaagagaaagagaaggaAGAGGataaagaaatggaaaaagaaaacgagaAGCCAGAAAGCCCAGAAAAGACTAAAGCAGCGGGGTCTCCAAGCCCCCCACCAACACATCACCGATCAGCTTACAAAAAGCAAGAACAGCAGCAATCACCTGTCAAACAGCCTTCACCCTCATCATCATCGCCATCTCcctcacccccaccccctcaagTCAAGGAAGAGAAAGAAGACAAGGAGGAAAAAGAGAAATCACCGCCTTTACCCAAGTCGAAGAAAACGACAAGTCGCCGCTACCGCAAACATTCACCGTCGCCATCCTCTACAGAAGGTGAGTGGTCAcctgagagaaagaaaaaagcgGACTCCTCTAAAGATCACAGAAAAGAACGAGAGCGAAGTGAATCTCCACGAGACAGAACAAGGAAACGGAGAGTTTCCTCACCTTCCCCCCGAAGAAGGCGGAGGGATTCATCCCCCTCCCCAAGGAAAAAGAGAAGAGCCGACTCACGATCACCCTCCCCAAGAAGAAAACGAAGGGAACATTCCCGCTCTCCATCTCCTCCCCGAAGACGCCATCAAGAACCACGTTCTCCTCCTCCCCGAAGGAGGAGAAAATCAGATTATTCCCCCTCACCTCCCCCCAGAGAAAGACGCCGACGCCCAGAGCCATCCCCGCCACGCAGCAGGGAGCGGCGAAAGGAGAGAATGTCACCCTCGCCCCCTCCCCAGCGTAGACGACGTCGATCAAGTTCGTCACCTCCCGCTCCCGCTCGTCGGGTACAGTCGTCGCCACCTTCGGGTCGCCGTCGGGTTGAAAGGTCGCGGTCCGATGATAGAGCACCAAAAGAGCGTCGCAGATCACCTGAGCCGGAGAAAGAAGCAGGTAGAAGAAGGAAGCGGTCTGAGCGATCTTCATCTGCCTCACCAGAGCCTCCTCAGAAGCCCCAGGCTGAGAAGGCAAAGGCAAGTCAGGCTAGAAGGTCCTCGTCTTCATCCGCATCCCCTGAACCATCGACCGCTAAAAAGAAATCTCGTGAGGCTCAGGAATCTCCCAGGGGAACCCCCCCTAAAGAGGTGTCCAGGGGGAGTAGGGAGGGGAGGAGACGGTCTGCCTCGCCTGACGTGGACTCGCGGGAGCGTAAACGAGTGGAGCGTAAATCAGCTTCCATGTCACCTGATAGGCCTAAAAGTCGAAAGTCAGCACAAGCTTCTTCAGTTTCACCTGTTCGTAAAACCAAGTCACGTGCGAAACGATCCGCTTCAGCCTCACCCCCACCCGCTAAGGCGGCCAGGTCACGTGGCTCAAGACGCTCGCCATCATCTTCCTCCGAACCAGAAAGCAAATCCAGATCCCGCACTGCCAAGCAATCTCCCAAGCCCTCTGCTTCACCTGAACCTCGTCAGCAGGCTCGTGCAGCTAAGAGGAGTCCCTCGGGATCTCCGCCACGAGAGCGGGTCAAGCGGAAAGCAGCGGCCAGGAGGTCCCCAAGTGAAGAAAAGTCTCCTGAGCCTCCGGTCAGAAAGGCCCGTCGAAGCCCCTCTGGACAAGAAGAGGAGGTACCGAAGAAGTCTCCTAGTAAATCTCCTCCTGCTAAGCAGGAAAGCTCAGCCGAGGAGCAGGAGAAaactgaagagaaagaagaaaaaaaaaagaagaaacataAGAAACATAAGAAACATGGCGGctcaaaacacaaacacaagcgttcaaaacacaaaaagcacaaagaaaaaGACAAGTCACCAGCGCACTCAGAAAGTATGGACGAAGACGATACGGAAACACTGGAAAGGAAACTCCGAGAGAAAGCTCTACAGTCCATGCAAAGACACAACAAATCCCCTCCAGCACCACAGGAACCTGAAGACGATTAATTTGATTGTACTGCTAAGAACGCCAGCCAGCAAGACAGCTCTTGTTGGCAAAAAAGGAAAGTTGATTCAGAGCACTGTGCCTGGCCCCTCCACGCTTCATCCAAAGTCTGCTGTATAGCGTGACGACCCATGGTATAGCGTGACTACGCATTGTAAAGTGTAATAAGTTTGTTGTCGAGTTTGTAAAGTTATCCTGCTCGCCTTAATCGTCTTTTTAGTCGTCACTAGGAGAAGCGTTGCATGTATTCGATTCGTTTCGTAATATTCCGTATCAACATAGAACAACAGACAGTATTGTATGCATAATTGTAGGGTTATGTTGTCAACTCTCCTGAAATCTGTTCGAAGTGGTTTCGTGACTGCAAGGAATCTCTTAACATGTCTGTTCAGTCCAAGTCTTGTCGGCACCCCCTCTAGTGTTTCTTGGATCAGTTCACGCAACGCGTCTTCCCCGTGACGGTCAACTGAAGAGTGGCTTTGTGGGAGACTAGGGAATGTGCGGTTCCACAAATAGACTCAATTTGTCTCAGGCCAGTGCAACACTTGCTGCCAGgcatgcttttgttttgttgcgcTGCTCAGGGTACAACACGAGGTGTTGCTTGTAGCGTCTGTAAGATTTCTACTTTCGAACTGTatttcaaccattttattttttgtgtacttttcGTATTTTTATCCTTTGAGAGAAAGTGTAAAGTGAAAATCTCAGCCGGTAGGTTTTAAATTCCGTCATATAAGCAAACACGGAATTCAATAAAGTCATTCCCGTGTATTGTAGTCTGCGTTATTACCCGCCATCCAAGCAGAGTTGGTGTTCTTGAACTTGTTTAGTTTTCAGCTTTTCTGTACTCACAGATAATGGAGGGGAACTTGATTGTTCTTCCTCCTCCTTGCTGTTCTTAGCCCGATTTCAGACATTTCTCCCAGGGATACACTAAGAGCAATCGTTATTCTTCTTCAAGCACAGCAGCCTGCAACTACTGGTCGCAGTTTACGTTGGGAGGGAGGGCGAGCGAACTCGTATTGTCTTAATCCTGGGGCGAGGGACTCCCATATAAATGCGACGAGAGTGCTGGTCGTACCTTTCATCGTTTATTCGTGGCTTGGTGCCGCCAGGATCATTCTGGCACCTTCATGGGTAGAAACTAGAATCTGAAGGTTACCTTGGCTTCTTGTTCGAATTGGTACATTTGAACCCCCCTCTTGGTCACCCCGTCAATACGCACCCCTTGGACAAGTGCCCTTACAGTCACTTTTTTCTATGTTTATAAAACCggttaatcCCATCACCCCTTTAATA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01480 all species →	PWI	PWI domain	Family	Interproscan
PF13472 all species →	Lipase_GDSL_2	GDSL-like Lipase/Acylhydrolase family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036483 all species →	Homologous_superfamily	PWI domain superfamily	Interproscan
IPR036514 all species →	Homologous_superfamily	SGNH hydrolase superfamily	Interproscan
IPR002483 all species →	Domain	PWI domain	Interproscan
IPR052225 all species →	Family	Serine/arginine repetitive matrix	Interproscan
IPR013830 all species →	Domain	SGNH hydrolase-type esterase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23148 all species →	SERINE/ARGININE REGULATED NUCLEAR MATRIX PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0005681 all species →	Cellular Component	spliceosomal complex	Interproscan
GO:0048024 all species →	Biological Process	regulation of mRNA splicing, via spliceosome	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K13171	SRRM1, SRM160; serine/arginine repetitive matrix protein 1	-	Spliceosome	ko03041	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_053245-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples

84TPM > 0

7Conditions

1,005.4Max TPM

300.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
holobiont · low.pH_high.temp	20	20	242.56	534.71
holobiont · low.pH Control.temp	20	20	430.38	698.06
holobiont · control.pH_high.temp	20	19	274.80	818.91
holobiont · control.pH Control.temp	19	19	323.74	1,005.39
Whole organism	4	4	76.26	83.19
unannotated	1	1	51.58	51.58
live coral tissue/skeleton	1	1	40.06	40.06

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR22214416	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	534.71
SRR22214421	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	446.28
SRR22214414	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	360.57
SRR22214415	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	344.49
SRR22214404	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	317.66
SRR22214410	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	309.72
SRR22214419	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	269.45
SRR22214409	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	256.39
SRR22214423	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	252.44
SRR22214406	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	211.15
SRR22214403	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	201.02
SRR22214418	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	189.90
SRR22214413	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	182.39
SRR22214405	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	166.95
SRR22214417	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	159.85
SRR22214407	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	152.49
SRR22214412	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	142.02
SRR22214408	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	138.27
SRR22214420	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	116.76
SRR22214402	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	98.65
SRR22214432	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	698.06
SRR22214435	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	649.86
SRR22214431	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	647.18
SRR22214440	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	628.47
SRR22214427	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	609.65
SRR22214434	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	603.54
SRR22214426	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	484.86
SRR22214425	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	480.62
SRR22214443	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	442.85
SRR22214438	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	413.61
SRR22214445	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	407.65
SRR22214430	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	396.22
SRR22214428	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	383.32
SRR22214441	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	320.83
SRR22214439	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	289.69
SRR22214424	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	285.84
SRR22214437	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	243.96
SRR22214442	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	241.85
SRR22214429	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	202.28
SRR22214436	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	177.30
SRR22214452	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	818.91
SRR22214449	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	766.35
SRR22214446	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	393.40
SRR22214447	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	387.76
SRR22214448	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	384.28
SRR22214456	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	352.28
SRR22214457	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	338.33
SRR22214465	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	329.71
SRR22214451	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	301.22
SRR22214454	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	293.21
SRR22214450	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	223.12
SRR22214453	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	208.77
SRR22214461	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	162.16
SRR22214460	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	120.11
SRR22214462	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	94.58
SRR22214464	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	91.15
SRR22214458	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	86.53
SRR22214459	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	79.78
SRR22214463	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	64.25
SRR22214467	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	0.00
SRR22214546	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	1,005.39
SRR22214433	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	845.73
SRR22214492	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	697.65
SRR22214455	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	658.17
SRR22214470	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	459.65
SRR22214524	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	405.95
SRR22214422	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	333.65
SRR22214469	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	239.71
SRR22214444	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	224.06
SRR22214481	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	174.52
SRR22214471	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	159.37
SRR22214468	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	157.67
SRR22214535	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	155.78
SRR22214548	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	126.77
SRR22214547	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	125.62
SRR22214400	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	124.37
SRR22214411	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	112.44
SRR22214466	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	89.64
SRR22214506	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	54.86
SRR14295603	Whole organism	Whole organism	not recorded	not recorded	SRP315757	83.19
SRR14295601	Whole organism	Whole organism	not recorded	not recorded	SRP315757	77.10
SRR14295604	Whole organism	Whole organism	not recorded	not recorded	SRP315757	72.57
SRR14295600	Whole organism	Whole organism	not recorded	not recorded	SRP315757	72.17
ERR12861049	unannotated	not recorded	not recorded	not recorded	ERP159209	51.58
SRR12454619	live coral tissue/skeleton	live coral tissue/skeleton	not recorded	not recorded	SRP277390	40.06

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.