Detailed information of FUN_053262-T1 in Siderastrea siderea

Genomic Location: contig_88:2797038...2809121
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF04969
all species →		CSCS domainDomainInterproscan
PF04968
all species →		CHORDCHORD FamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR008978
all species →		Homologous_superfamilyHSP20-like chaperoneInterproscan
IPR007052
all species →		DomainCS domainInterproscan
IPR007051
all species →		DomainCHORD domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR46983
all species →		CYSTEINE AND HISTIDINE-RICH DOMAIN-CONTAINING PROTEIN 1Interproscan

 Gene Ontology
No Gene Ontology signature was detected for FUN_053262-T1. This gene does have a gene model — the search simply returned no hit.
Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K16729CHORDC1, CHP1; cysteine and histidine-rich domain-containing protein-Chromosome and associated proteinsko03036deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_053262-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
7TPM > 0
7Conditions
37.4Max TPM
2.4Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 0 0.00 0.00
holobiont · low.pH Control.temp 20 0 0.00 0.00
holobiont · control.pH_high.temp 20 1 1.69 33.80
holobiont · control.pH Control.temp 19 0 0.00 0.00
Whole organism 4 4 26.69 33.24
unannotated 1 1 25.95 25.95
live coral tissue/skeleton 1 1 37.42 37.42

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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