Detailed information of FUN_053373-T1 in Siderastrea siderea

Genomic Location: contig_89:888367...890325
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF06090
all species →		Ins_P5_2-kinInositol-pentakisphosphate 2-kinaseFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR009286
all species →		FamilyInositol-pentakisphosphate 2-kinaseInterproscan
IPR043001
all species →		Homologous_superfamilyInositol-pentakisphosphate 2-kinase, N-terminal lobeInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR14456
all species →		INOSITOL POLYPHOSPHATE KINASE 1Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005524
all species →		Molecular FunctionATP bindingInterproscan
GO:0005634
all species →		Cellular ComponentnucleusInterproscan
GO:0032958
all species →		Biological Processinositol phosphate biosynthetic processInterproscan
GO:0035299
all species →		Molecular Functioninositol-1,3,4,5,6-pentakisphosphate 2-kinase activityInterproscan
GO:0052746
all species →		Biological Processobsolete inositol phosphorylationInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for FUN_053373-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_053373-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
18TPM > 0
7Conditions
47.1Max TPM
1.8Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 3 1.22 10.55
holobiont · low.pH Control.temp 20 2 1.47 15.10
holobiont · control.pH_high.temp 20 3 0.38 3.12
holobiont · control.pH Control.temp 19 4 3.35 47.15
Whole organism 4 4 4.30 5.49
unannotated 1 1 5.74 5.74
live coral tissue/skeleton 1 1 3.43 3.43

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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