Gene detail

Detailed information of FUN_053560-T1 in Siderastrea siderea

Genomic Location: contig_89:3121918...3136501
NR annotation: no NCBI-NR hit recorded
Species abbreviation SSIDE · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

FUN_053560-T1

ATGGGCAAAACTTCAAAGGAAGGCAGTGATTccaaaaggaaaagaaagcgaGTGGCGGTTGAATCGAGCAGTGACGACGATGAGAGTGAACAAGACTTAGAAGAGGAACTGAAATCCCTTGCAAAGCGCTCGAGGCAAGCGCAAGAGAATTCCAAGCCACAGCGATCAGGAGACTCTGACAGCGACCTAGACTCATCAGAAGGAAGCGATGCTGAGTGGACAATGGATTCTGAAAACAGTAAAGGAAAGGGAAAAGCCAAAgctaaggaaaagaaaaagggaGGCAAGAAAGCTGGTTCATCATCTGGCTCTTCTTCAGAAGAAAGTGGTGAAACTTCATCTGGTGAGTACTCGTCATCGTCATCTTCATCAGAAGATGAAGACGATGAACAATATCATGATGGCTGGGATGACAACCTGATGGGAGATGAGGCAGATAGAGAACGACTtgaaaaaatgactgaaaaagaaagagaacaagAAATATTCAACCGTGTTGAGAAAAGAGAAGCCCTGAAGACGAGATTTGAAATAGAGAGGAAATTGCGGCTTGccaagaggaaagaaaagaagaaaaaacggGAAAAGGAAAAGGCAAATCTCGAGAAAGAAGGTATAGCTCTGAGGAAGAAAGAGCGAAAGAGACATATCGAGGAAAAAAAGGCCAAGGCATTAGATGACTTGAAAGCAAAAAGAtctgagaaaaaggaaaagaaagttgCAGAATCAATGGCAGAACAGAAAGAGCCACAGTTAAAAGCCAGTGATGTTTTCACAGACGATGAGGATGACGATGAACAAGAGGAAAGCAAATCAAGTTCAGGGGAAGGATCATACAGAGAATCTGAAGATGAGCAAGGTGAAGATGAACCTCTAAAAGTCTCCTCAGTTGATGATCTGGAAAGAATAAGAGTTTCAAGACACAAGCTTGAAAGatGGGTGCACATGCCCTTCTTTGGCAAGATAGTGTCCGGATGTTTTGTGCGCGTTGGTATAGGAAGCCATGATGCAAGGCCTGTTTACAGGGTTGCGGAGATAAGAGATGTGGTTGAAACAGCAAAAGTATACAGTTTGGGAAACACAAAGACAAACAAGGGACTAAAGCTTAAGTATGTACATACTTGACATGTACAGTACTTTTGAGACTAATATTGGGTAAAGCTTGGTTGGAAATTGTGGATTTGCTACATTTGCATTATTGTACTTAAAAACTGATGATCCCAAATTTATGTCCTTTGAAATGGCTTGAAAGCTTTCCCATTGATGCACTGTTGTCATGTTGACAGACGATATCTTTTGTGACATTATTGTGCAGGGCTGTCCTTACATGTAAATTTTAAATCACCCGTTGCCTTGATCTTTACACCCGTAACAAACATGTTGCTTTgtgcagggttcaaaataaaatcagagctttcagcctgaatttgacggctttttttctcaaggctgatttttagccggctgttAACATGAACaaacaagcacctatcccaagtatggcataaagtgttgacaggccaaatGCGGCTCATATGCTCATGCTAATGTGtttgaatatttttcttagcaatggttgatttttaaaTAAGTGTCATTTGCTCATAAGGgtgttcttaaaattaggcagaGCCGAGTGGTAGTTGTTGTGAAAGGCAGAATTTTCCgcactgtctctctttgttgaagtgccgacttcctttcactgaatttgactttgGACGTTGTTCTTTCTACTAGACTGTTGGGGTAGTCTCTTGCAGGGCgaggcgtgttttgaattggATGATATTCTCGATGAAAGATTTCGCTGATAAACCCTTTGCTGACCCTTTTCTAACCCAtggtgggtggcaggaagagaaATGAGTGTACCGGAAAGTTTCTGTGGGCTTAAAATGTATGCAgatatcaaggattgcttgcttgttaaatctttTGCCTCTGAAAAGAgtggtatccaggaagtttatttttttttgtctgagatttcagccgtaaatttcattgccgggtggtgactgtttgctaggGCAATAAACTCCTCTATCTCCTTTTTGTCAGcattccacagcgagaatatgtcatcgatgtaccttttccactcaagtggtcCAAGAGTGTAGAACATTTGTATTGCTGTTTGACTGAGCATGTGGCGTTATGCTGAACCCGATCAGTGTTTTCTTTGACCTAGATTCATCAGATTTCGCTCTTCACAATTTATCATTGTTGCGTTCAACGCGgtgataatgaaacttggttagTGCACCTATGAATTTTAGCTGGACCTTTTTCTTTGTGGAGtttatttctgtcttaaactcctcgtCATGAGTGACGTTTGCTTTTGCGACACACTGTAGTGCAAGTCTCTTGGGCATGTGCCCttttctgtgtgggcctgaagtttaaGTATCGATGTTTCTGACTGCtcaatttttctcttgagcatggaaatctcaGCGATGGCGGAACTAGGAGGGTCCCTCGCTGGCATTTCgcaaattagatcaggcctttgaaaatgataaatgccgcaacagtgacactgattttcagcgcgacggcacatttcctttggtctctagcaaattaaattggatgagaaggcgaaagcacacgaaaagagcgacaaggtgctaagtggaacaggatcgaAGACG

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03126 all species →	Plus-3	Plus-3 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036128 all species →	Homologous_superfamily	Plus3-like superfamily	Interproscan
IPR004343 all species →	Domain	Plus-3 domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13115 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0016593 all species →	Cellular Component	Cdc73/Paf1 complex	Interproscan
GO:1990269 all species →	Molecular Function	RNA polymerase II C-terminal domain phosphoserine binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for FUN_053560-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.