Detailed information of FUN_053561-T1 in Siderastrea siderea

Genomic Location: contig_89:3136543...3147502
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
No Pfam domain signature was detected for FUN_053561-T1. This gene does have a gene model — the search simply returned no hit.
 InterPro
InterPro termTypeDescriptionSource
IPR027417
all species →		Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR042427
all species →		FamilyZinc finger FYVE domain-containing protein 1Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR46624
all species →		AGAP002036-PAInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005545
all species →		Molecular Function1-phosphatidylinositol bindingInterproscan
GO:0005547
all species →		Molecular Functionphosphatidylinositol-3,4,5-trisphosphate bindingInterproscan
GO:0005811
all species →		Cellular Componentlipid dropletInterproscan
GO:0032266
all species →		Molecular Functionphosphatidylinositol-3-phosphate bindingInterproscan
GO:0043325
all species →		Molecular Functionphosphatidylinositol-3,4-bisphosphate bindingInterproscan
GO:0140042
all species →		Biological Processlipid droplet formationInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for FUN_053561-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_053561-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
21TPM > 0
7Conditions
53.0Max TPM
4.8Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 2 2.84 46.21
holobiont · low.pH Control.temp 20 1 1.81 36.15
holobiont · control.pH_high.temp 20 5 5.13 47.54
holobiont · control.pH Control.temp 19 7 9.34 53.05
Whole organism 4 4 6.32 7.22
unannotated 1 1 4.91 4.91
live coral tissue/skeleton 1 1 6.61 6.61

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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