Detailed information of FUN_053919-T1 in Siderastrea siderea

Genomic Location: contig_91:2684901...2690896
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
No Pfam domain signature was detected for FUN_053919-T1. This gene does have a gene model — the search simply returned no hit.
 InterPro
InterPro termTypeDescriptionSource
IPR042481
all species →		FamilyCoiled-coil domain-containing protein 57Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR46725
all species →		COILED-COIL DOMAIN-CONTAINING PROTEIN 57Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005814
all species →		Cellular ComponentcentrioleInterproscan
GO:0005876
all species →		Cellular Componentspindle microtubuleInterproscan
GO:0007020
all species →		Biological Processmicrotubule nucleationInterproscan
GO:0007099
all species →		Biological Processcentriole replicationInterproscan
GO:0034451
all species →		Cellular Componentcentriolar satelliteInterproscan
GO:0045931
all species →		Biological Processpositive regulation of mitotic cell cycleInterproscan
GO:0060271
all species →		Biological Processcilium assemblyInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for FUN_053919-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_053919-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
6TPM > 0
7Conditions
15.4Max TPM
0.5Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 0 0.00 0.00
holobiont · low.pH Control.temp 20 0 0.00 0.00
holobiont · control.pH_high.temp 20 0 0.00 0.00
holobiont · control.pH Control.temp 19 0 0.00 0.00
Whole organism 4 4 6.66 10.56
unannotated 1 1 2.06 2.06
live coral tissue/skeleton 1 1 15.40 15.40

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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