Gene detail

Detailed information of FUN_053967-T1 in Siderastrea siderea

Genomic Location: contig_92:554049...574804
NR annotation: no NCBI-NR hit recorded
Species abbreviation SSIDE · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

FUN_053967-T1

ATGGCTAAAGTCAAGTACTTGTCAGGTGAAACAGATGCTGCGAAAGCCATGCTGACTCATTGCCTTGACCAAGACTCAACCTTTTCTGACGCTCATCTACTCATGGCACAGATTCATCTTCAGCAAGGAAACTACAAACTTGCTGAACAATCCCTTGAAGTTGGGCTCAGCTACAACTTTGAGGTGAGGAATCATCCTTTGTATCATCTGATCAAAGCAAGAGTACAGAAGAAGATGGGTCACCCTGAAGAGAGTGTAAACACCATGCAAGCTGCAATGAACCTTCCTGGAGTGAAAAAAGCAGctccaAAAGCGCAAGGAAAGAAAATAGCGATATCCTCCAGTGACAGAGCGGCAGTGTATCTTGAACTCGTTGATGCTCACATGGAAGCTGGGCAGCTGCATGAGGCAACCAAAGTGATGCAGGATGCTTTGGAAGAGTTTAATGGCACTCCTGAACAAGTTAGGGTTCAGATATCTAATGCAGACCTTGTGTTAAAGAATGGTGATACGGAACAAGCCTTGACTATACTGAGACAGATAACTCCAGAACAAAgTTACTACATCAAGGCAAAAGAAAAGATGGCGGACATATATTTACATCACAGGAAGGACAAGCGTTTGTACGCCAGTGTATACAGAGAACTAGTTGACAAGAATCCAAGTGCTCACACATGCCTGTTGCTAGGAGATGCTTACATGAGTATACAGGAGCCTGAGAAAGCAATCGAAGTGTACGAGACAGCACTGAAACGGAACCCCAGAGATGGTGCGCTGGCGAGTAAAATAGGGCAGGCTCTAGTGAAAACACACCATTTTGGCAAGGCAATCAACTACTACGAAGCTGCCTTGAAATCAGGACAGCAAAACTTTTTAAGGTACGACTTGGCTGAGTTGTATCTCAAGTTGAAAAACTATGAAAAAGCGGACAAAGTTATCAAGGCAGCTCTGGAACAAGAGAAAGCTAATGACCTTCCGTCTCTCATGGAAGAAGCTCGACTTCTAAAGCTTCAAGCGCACGTTTATCAACGGTCTGGCAATGCTGAAGAAACCCTCAAGACTCTGACAAGAGCTAAGGAAGTTCAAACTAGGGTTTTGAGAAGAGTTGGTGTGGAGCAACCAGATGCTGTAAAAGCACAGAAACTGCAAGCTGCAAAAATTTGTGAAGAGATGGCGGAACTTTCCACCAGTGCCAGAGAATACGATAAAGCGATTAATTTCTTCAAGGAAGGTCTGATATACGACGAAACGTACATACCTGCCATGCTGAAGCTGGCCAGAATGTTTTTGACAGTGGATGATCTGGATGCGTGTCAACAGCAATGCGTTCAGCTTTTGAAAATGGACGCGGAAAATGATGACGCTACTGTTATGATGGCAGATTTGATGTTTAGGAAAAATGAGTATGATTCCGCCACGTTTCACTTTCAGCAGCTTCTAGAGAGAAAGCCAGGCCACTACAGTGCACTTGCTCGCCTGATTAATCTCCTAAGACGAGCGGGAAAATTGGACGAGTGTTCTAAATATATTGAACAGGCTGAAAGCGCTGTTCCCCGCGCAGCTATGGACCCGggattaaattactgtaaagGACTCTTTAACTGGTATACTGTAAATCCCACGGCGGCTCTAAAACACTTTAATCTGTCAAGGAAGGACTCCGAATGGGGCGAGAGAGCTGTGTACAACATGATCGAAATCTGCCTGAACCCAGATAACGAGACATTGGGAGGAGAAACCTTTGATGCGGTGGATGGTGATGTCAGTCAAAACGAGAAACAGGATTCAGAAATGATGGCTGTCCGCACTGCTGAGAAGCTGCTTAAGGATTTAAAGCCCAAGGGGAGCCCTCTCAAATACCGGATACTGGAGAATAGTGTTCTGATGGCCTTCAAGACAAAACCTAACGTGGAGAAAGCCTTGTCACAGTTCATGGAAATTGCCACAACAGAGAATGACTGTGTCCCAGCTTTACTGGGCATGGCCACGGCGTACATGTACCTAAAGCAAACACCGCGGGCTCGAAACCAGCTTAAAAGAATTGCCAAAATGAACTGGAATGCCTGGGAAGCAGAAGAATTTGAGAGGAGCTGGCTCCTACTCGCTGATATTTATATCCAGTCTGGCAAGTTTGACATGGCTGGCGATTTGCTAAAGAAGTGCCTTCAATACAACAAGTCTTGCTGTAAGGCGTGGGAGTATATGGGTTACATTATGGAAAAAGAACAAGCTTACAAAGACGCGGCCAAAAATTACGAGAATGCCTGGATTTACGGCAACCAAAGCAATCCCACAATTGGTTACAGACTGGCGTTCAACTATCTCAAGGCAAAGCGCCTTGTAGATGCTATTGACGTTTGTCACAAGGTTTTAAGCCAGCATCCAAACTACCCCAAGATCAGGAAAGAAATCTTGGATAAAGCGCGGTCAGCACTGAGGGCATAA

Transcript

FUN_053967-T1

tccagggggggagtagtaatactccaagtcactttatgctgggtatcctgtgatggactagcatcccatccaggggggagtagtaatactcctagtcactttatgctgggtatcctgtgatggtctagcatcccatccagggaggagtagtaatactcaaGTCACTCAATGCTGGGTATCTCGTGATGgtctagcatcccatccagggggaagtagtaatactccaAGTCACTCAATGCTGGGTATCtcgtgatggactagcatcccatgctACAGAAATCAGAGCTAAGTGCTGGCTGTTTTGGCCATTCGCGGCTCGTATGCGACTTTACTTACCTTGCTCATCCCAGTAAAACTGGAACACTGCCATGATAAAGTTTCTCACTTTAAAGCCCTATACTGATCATTTTATGTTGTGATTGTTTTACAGGGTCTGGCTCTTGGAGTGAAATACTTCTACAGCTTAAACCCTGATTTCCTACTTCAGATAATAAATGACTACCTTGTCTATGCTCCTACTGAGGTTTGTACATTTTAATCTATCTTTTTTGTCCAGTTTACAGTTAAAGTAGGCAAGACCATGTATTGTGTAGTCGTAAAACTACAACACATGTAGCTACAGTATTGTTCTATGTCAACGTAATACATGGTTTTGCCGGCGTTGTTGACTGCATGGTACAGTAATAATTCTAAGCAAAAACTGACATGGAACAATTTCTCCAAGTTTTATTTCATCACTGATCACCGTTTTCTATGCTTGTTTTCCATATCACTTGTCTAAATTCTTTGATATATTACCTTCAATTTCTGCTGAGAATTATACGTCAAAAAAGCTTCAATAAATCAGTCATAGCAGGTGCAACTTCCAACTACCTGAACTACATGTATGCCtgcaaaaaagggaaaaaataacatggtaaaaataaaaataaaagtttcTTAAACAGATGGAGATTAGTTTATTAGACACACAAGTCATGTTCTTAATGTGTTAACTCAGGCACAGAGCCCAGGTCAGCCGCCACCTCCTCTTCTTAAACGCTGTGCTGCCGTCTTAGATCCTCTGACAAAAAGCGTGCCAGGTTTGCTGGAAGGACTGTATCTCATGGCTAAAGTCAAGTACTTGTCAGGTGAAACAGATGCTGCGAAAGCCATGCTGACTCATTGCCTTGACCAAGACTCAACCTTTTCTGACGCTCATCTACTCATGGCACAGATTCATCTTCAGCAAGGAAACTACAAACTTGCTGAACAATCCCTTGAAGTTGGGCTCAGCTACAACTTTGAGGTGAGGAATCATCCTTTGTATCATCTGATCAAAGCAAGAGTACAGAAGAAGATGGGTCACCCTGAAGAGAGTGTAAACACCATGCAAGCTGCAATGAACCTTCCTGGAGTGAAAAAAGCAGctccaAAAGCGCAAGGAAAGAAAATAGCGATATCCTCCAGTGACAGAGCGGCAGTGTATCTTGAACTCGTTGATGCTCACATGGAAGCTGGGCAGCTGCATGAGGCAACCAAAGTGATGCAGGATGCTTTGGAAGAGTTTAATGGCACTCCTGAACAAGTTAGGGTTCAGATATCTAATGCAGACCTTGTGTTAAAGAATGGTGATACGGAACAAGCCTTGACTATACTGAGACAGATAACTCCAGAACAAAgTTACTACATCAAGGCAAAAGAAAAGATGGCGGACATATATTTACATCACAGGAAGGACAAGCGTTTGTACGCCAGTGTATACAGAGAACTAGTTGACAAGAATCCAAGTGCTCACACATGCCTGTTGCTAGGAGATGCTTACATGAGTATACAGGAGCCTGAGAAAGCAATCGAAGTGTACGAGACAGCACTGAAACGGAACCCCAGAGATGGTGCGCTGGCGAGTAAAATAGGGCAGGCTCTAGTGAAAACACACCATTTTGGCAAGGCAATCAACTACTACGAAGCTGCCTTGAAATCAGGACAGCAAAACTTTTTAAGGTACGACTTGGCTGAGTTGTATCTCAAGTTGAAAAACTATGAAAAAGCGGACAAAGTTATCAAGGCAGCTCTGGAACAAGAGAAAGCTAATGACCTTCCGTCTCTCATGGAAGAAGCTCGACTTCTAAAGCTTCAAGCGCACGTTTATCAACGGTCTGGCAATGCTGAAGAAACCCTCAAGACTCTGACAAGAGCTAAGGAAGTTCAAACTAGGGTTTTGAGAAGAGTTGGTGTGGAGCAACCAGATGCTGTAAAAGCACAGAAACTGCAAGCTGCAAAAATTTGTGAAGAGATGGCGGAACTTTCCACCAGTGCCAGAGAATACGATAAAGCGATTAATTTCTTCAAGGAAGGTCTGATATACGACGAAACGTACATACCTGCCATGCTGAAGCTGGCCAGAATGTTTTTGACAGTGGATGATCTGGATGCGTGTCAACAGCAATGCGTTCAGCTTTTGAAAATGGACGCGGAAAATGATGACGCTACTGTTATGATGGCAGATTTGATGTTTAGGAAAAATGAGTATGATTCCGCCACGTTTCACTTTCAGCAGCTTCTAGAGAGAAAGCCAGGCCACTACAGTGCACTTGCTCGCCTGATTAATCTCCTAAGACGAGCGGGAAAATTGGACGAGTGTTCTAAATATATTGAACAGGCTGAAAGCGCTGTTCCCCGCGCAGCTATGGACCCGggattaaattactgtaaagGACTCTTTAACTGGTATACTGTAAATCCCACGGCGGCTCTAAAACACTTTAATCTGTCAAGGAAGGACTCCGAATGGGGCGAGAGAGCTGTGTACAACATGATCGAAATCTGCCTGAACCCAGATAACGAGACATTGGGAGGAGAAACCTTTGATGCGGTGGATGGTGATGTCAGTCAAAACGAGAAACAGGATTCAGAAATGATGGCTGTCCGCACTGCTGAGAAGCTGCTTAAGGATTTAAAGCCCAAGGGGAGCCCTCTCAAATACCGGATACTGGAGAATAGTGTTCTGATGGCCTTCAAGACAAAACCTAACGTGGAGAAAGCCTTGTCACAGTTCATGGAAATTGCCACAACAGAGAATGACTGTGTCCCAGCTTTACTGGGCATGGCCACGGCGTACATGTACCTAAAGCAAACACCGCGGGCTCGAAACCAGCTTAAAAGAATTGCCAAAATGAACTGGAATGCCTGGGAAGCAGAAGAATTTGAGAGGAGCTGGCTCCTACTCGCTGATATTTATATCCAGTCTGGCAAGTTTGACATGGCTGGCGATTTGCTAAAGAAGTGCCTTCAATACAACAAGTCTTGCTGTAAGGCGTGGGAGTATATGGGTTACATTATGGAAAAAGAACAAGCTTACAAAGACGCGGCCAAAAATTACGAGAATGCCTGGATTTACGGCAACCAAAGCAATCCCACAATTGGTTACAGACTGGCGTTCAACTATCTCAAGGCAAAGCGCCTTGTAGATGCTATTGACGTTTGTCACAAGGTTTTAAGCCAGCATCCAAACTACCCCAAGATCAGGAAAGAAATCTTGGATAAAGCGCGGTCAGCACTGAGGGCATAACTCGTTCCAGGCTTATCATTCTTGCTCTGCCACGCCATGCAGAGTGGTTTTTATTTATGTCACCTGTAATGTTCCAGATTGTGGGGAGATCGTTTTTCTCTCATCTAAAGCCTGAAACAGGAAAAACATCCCCGAGAAATAATGCCGAATTGTCTCTTCTCGTCAGTGGAGTAGGGAACGTTTTTTCAGCAAGCACTCACTCGAGTGCCAAAGACGTCTTGTTGCTTAGTAATGTCACTGACCAAAAAACGACAATCGCGTGTCAGCACCATCAAACCACTTTTGCCAAACACTTTCTATTCACAACAATTTCTATTCACTCGTTAAAAGTTTGTAAATAGATTTGTGACTTCCATTTTAAAGTAGATTGCATATCGCCTAAACGCTTGCAATAAAAGGCTTGCGTTGTAAATAATGATTAAATTATCGAAACGAGAACATTTGTGTCTCTTCTTTGCGGTTATTGCAGTAGCC

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13432 all species →	TPR_16	Tetratricopeptide repeat	Repeat	Interproscan
PF14559 all species →	TPR_19	Tetratricopeptide repeat	Repeat	Interproscan
PF13181 all species →	TPR_8	Tetratricopeptide repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR040364 all species →	Family	Tetratricopeptide repeat protein 21A/21B	Interproscan
IPR019734 all species →	Repeat	Tetratricopeptide repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14699 all species →	STI2 PROTEIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0030991 all species →	Cellular Component	intraciliary transport particle A	Interproscan
GO:0035721 all species →	Biological Process	intraciliary retrograde transport	Interproscan
GO:0061512 all species →	Biological Process	protein localization to cilium	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K19673	TTC21B, IFT139B; tetratricopeptide repeat protein 21B	-	Cilium and associated proteins	ko03037	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.